Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq963 127 3e-24 seq1316 95.1 1e-14 >seq963 Length=117303 Score = 127 bits (140), Expect = 3e-24 Identities = 507/783 (65%), Gaps = 20/783 (3%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || || || |||||||| ||||| ||||| || | || ||| | ||||| Sbjct 41683 TACTCGCCCACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGCGAGATCATATCCATC 41624 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC--CCAATCTGTTTGAGGAGAC 127349 | || ||||| ||||| | | |||| |||||| | ||| | || | || |||| Sbjct 41623 CAGTCGAATGGATTCTTGGCATGATAAATC-TTGGCAACACCCAGTGAGTAT-AGCAGAC 41566 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 127408 | || | ||| |||||||||||| | |||| | |||||||| || ||||| | | Sbjct 41565 GGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAGCTCGA 41506 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||||| ||| | ||| | | |||||| |||||| || || | || || Sbjct 41505 CA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCACGAATAATCTCG 41447 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAA--AGTCTTGAAGAGTTCC-ACA-GCAAA 127524 || | | | || | | | ||| ||| ||| | || | | ||| ||||| Sbjct 41446 TGCACA----CGACTCGCTGGCAATTTGTTAACCAGTTTCGAGTACATGAGACAAGCAAA 41391 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| | ||| || ||||| || || || |||||||||| ||||| ||||| Sbjct 41390 GTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCAT 41331 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||||| || ||||| | ||| || || | || || |||||||||||||| || || || Sbjct 41330 CAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTC 41271 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCAAACCACT 127703 || | || ||||| |||||||| || || | || | || | ||| |||||| Sbjct 41270 TACCGAAGCAAACGCCAATAGACGTTCCGCGTACGA-TGACACACGGGGGTCACACCACT 41212 Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTT 127763 | | ||||| | || || |||| || |||||||| || | || || | ||| | Sbjct 41211 TGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGAT 41152 Query 127764 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGT 127823 | || ||| | || || || || |||| || || |||||| || || Sbjct 41151 GATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGT 41092 Query 127824 GGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 | | ||| || ||| ||| | |||| || |||| ||||| || || || Sbjct 41091 GAA--TATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCAC 41034 Query 127882 CTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAA 127941 |||| | ||| || | || ||||||| ||||| ||||| | |||||||| Sbjct 41033 TTCATTGCTAAAGTTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAA 40974 Query 127942 CGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAG 128001 || || | || ||| || || | ||||||| || | || || ||||| || | ||| Sbjct 40973 GGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAG 40914 Query 128002 ATC 128004 ||| Sbjct 40913 ATC 40911 >seq1316 Length=31230 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 176782 GAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACC 176841 |||||||||||| || || ||||| ||||| | || || |||||||| || ||||| Sbjct 19729 GAGTTGCGCCACAGACGCATCGCGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACC 19670 Query 176842 GTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACC 176901 ||| || ||||| || || || | ||||| || ||||| || | ||| || || ||||| Sbjct 19669 GTACTGGTCACGCCCGACAACTGCAAGACCTGCCACTGCTAGTGCCTTTGCTGAGTCACC 19610 Query 176902 CTCCGTCACGATGAGCG 176918 || |||| ||| |||| Sbjct 19609 TTCGGTCAGGATAAGCG 19593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613476056840760