Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3454 138 1e-27 seq977 104 3e-17 >seq3454 Length=44902 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| |||||||||||||| || || || || |||| || Sbjct 42 CACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGACAGCGTACGACCGTCTTC 101 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| ||||||||||| | ||| | || |||||||| Sbjct 102 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 161 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| | ||| | ||| | | | || || ||||||||| |||| |||||| || | Sbjct 162 AATCTTTTGCTTCA-CGTTGTCAATCGAATCAGACGATTCCACCTCCAGCGTGATCGTCT 220 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||||||| || || ||||| || ||||| ||| Sbjct 221 TGCCCGTCAGTGTCTTGACAAAAATCTGCATCTTG 255 >seq977 Length=24603 Score = 104 bits (114), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || ||||||||||| || || || || | || || ||||||||||| || || | Sbjct 11104 CCTTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 11045 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| || |||||||| | || | | ||||||||| ||| |||| ||||| | | | Sbjct 11044 TCAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 10986 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| || ||||| |||| || ||||| ||||| |||| || || ||| Sbjct 10985 TCAATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACA 10926 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 10925 AAGATCTGCAT 10915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565209707085720