Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq963 150 2e-31 >seq963 Length=117303 Score = 150 bits (166), Expect = 2e-31 Identities = 398/599 (66%), Gaps = 8/599 (1%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| | ||||||||||| |||| || || || | ||| || ||||| || Sbjct 41406 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 41347 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | || ||||| || || ||||| ||||||||||| || | | ||| ||| | Sbjct 41346 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAG 41287 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||| | ||| || || | || || |||| || || || || ||| | | Sbjct 41286 AGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACAC 41227 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | | | ||| || ||||| | ||| || | ||||| || || ||||| || | Sbjct 41226 GGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAA 41167 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 | || || | | | ||||||| | | | || || || || || | Sbjct 41166 TAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGTG 41107 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 |||| | |||||||| | ||||| || || |||||||| ||||||||||| || || | Sbjct 41106 AATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTT 41047 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCCGTC 133304 | || |||||||| | || ||| | || | | ||||| || || || ||||| || Sbjct 41046 CAGGTACTTGCACTTCATT-GCTAAA-GTTCATGGCGAGATTCTCATTCACAATGCCATC 40989 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 ||||| || |||||||| ||||| ||||| || ||||| || || ||||| | ||| | Sbjct 40988 ACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGT-AAGTG 40930 Query 133365 CTC-CCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422 | ||| || | | | | || || | ||| | ||| ||| | ||||| ||||| ||| Sbjct 40929 TTTTCCAATC-CTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCC 40871 Query 133423 TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 |||||||| |||||||| ||||| ||| | || || ||||||| |||||| || Sbjct 40870 TCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAACG 40812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500147409978240