Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3725 178 2e-39 seq618 132 6e-26 seq963 120 4e-22 >seq3725 Length=16789 Score = 178 bits (196), Expect = 2e-39 Identities = 1146/1824 (63%), Gaps = 38/1824 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 |||||||||||||| || || || ||||| ||||| | ||||| || | |||||| Sbjct 3478 TAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGGTGAGTTTA 3419 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||| | ||||||| ||| ||| | |||| Sbjct 3418 CTGATCGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAATGTAAGCACCA 3359 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || ||||||| || || | | | || || | |||||||| || || |||||| Sbjct 3358 CGGTCAGCCGACAGATCTAACACCGATTTCTGCTTGATTTCCCACACTGTTTTGTACTTC 3299 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | |||| || || |||||| | | ||||| | ||| |||| | |||| || Sbjct 3298 TCTTTGACATGGTCCGGAATGGTCTTCACCTTTTGCACAGAACCACGGTCGTTCAGTATC 3239 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 | | | ||| || ||||| | | | | | || || | | || | |||| Sbjct 3238 TGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTCTTTCATCAGGTACTTG 3179 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | || ||||||||||| |||||| ||| ||||| | |||||| || Sbjct 3178 TTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGACGTGTACGGC 3119 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| |||| ||||| || ||||| || ||||| ||||| || ||||| ||||||| Sbjct 3118 TCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCACT 3059 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 || | | ||| |||| || | | | | || ||| || ||| ||| || || Sbjct 3058 AGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAGTCCCAA 2999 Query 109894 CGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCA 109953 ||||| | || |||| |||||| || || | | ||||| || Sbjct 2998 AGACCAGAGGACGGGGTGACACC---CCACATGTCGAACTGGAAGATACCCTTGCTGGCC 2942 Query 109954 GGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT 110013 || || |||| || ||||||||| ||| | | ||| | ||| || | ||| Sbjct 2941 GGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGGATGTCTCC 2882 Query 110014 AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAG 110073 | | |||| ||| || ||||||||||||| |||| |||| || || | Sbjct 2881 ATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTT 2822 Query 110074 TCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAAT 110132 ||||| | | || || | |||| || |||| || |||||||||||||| | || | Sbjct 2821 TCGAACGCATAGTTCATGA-GAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCAC 2763 Query 110133 GGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGAT 110192 ||||| || |||||| || |||||| | | || ||||| ||||| ||| || Sbjct 2762 AGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAAT 2703 Query 110193 GACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA 110252 ||| || || || || || |||||| | |||| || || | ||| ||||| Sbjct 2702 AACCTTGTTAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAA 2643 Query 110253 CGTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAG 110311 | |||| ||| ||| | || || | ||| | |||||| | |||||||| | Sbjct 2642 -GACACCGTCCTCC------ACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGG 2590 Query 110312 AAGTCTCGTCTTTGTCGGTGTAT--TCCAAAATTTCCGTACACAAGTT---GGAACTCTT 110366 ||| || | || |||| |||| | || |||||||| ||| | | Sbjct 2589 CCACCTCATCC--GGCGACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGAT 2532 Query 110367 AATGACACCCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGT 110425 || ||||| |||| ||| || || || |||| ||| |||||| ||||||| Sbjct 2531 CGTG----CCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAA 2476 Query 110426 ATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGA 110485 |||| || || || |||| | | | |||| ||||| | || ||| Sbjct 2475 ATGGCACGCCCGTCTCAATCTGCGCATCTAAAATGCTGAACCATAGCT--GCTGCGCATT 2418 Query 110486 CAGTTGCGTT---AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCT 110542 | ||| || |||| | || |||| |||||||| || | ||| || || | Sbjct 2417 AA-TTGTCTTGCGAGCGCGTCCCTCCTTTTCGTACTTTTCATAAAGCGTCTCGAACTCGT 2359 Query 110543 GTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA 110601 ||| | ||| || | ||| | || | || |||||||| | ||| || ||| Sbjct 2358 CTCCCCAGCAC-TCGTAGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCA 2300 Query 110602 CCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGG 110661 | || |||| ||||| ||||| ||||||||||| | || |||| | |||||| Sbjct 2299 TTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGC 2240 Query 110662 CAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAG 110721 || | ||||| ||| ||||| || || || | ||| || | | || | Sbjct 2239 GCTCGGTGCAATTCATTACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCA 2180 Query 110722 TGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCCT-GGTTAACA 110778 ||||| || || | || | ||| | |||||| || || || | ||| ||| || Sbjct 2179 TGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACG 2120 Query 110779 TAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTT 110838 || || || ||| | || || |||| | ||| ||||| || || | || |||||| Sbjct 2119 TATCGGGCCGTGTCGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTA 2060 Query 110839 GTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCC 110898 || || | ||| | ||| |||| || |||| ||| ||| || ||||| ||||| Sbjct 2059 GTGCCACGAATATAGCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCA 2000 Query 110899 GCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCT 110958 ||||| || ||| ||||| | | | ||| |||||||||| ||||||||||| Sbjct 1999 GCCCATTTGGAAATGCACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCA 1940 Query 110959 GCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAG 111018 ||| | || | || ||| || || |||| || || ||||| ||||| ||||| || Sbjct 1939 TCCTGCATAGCTAGTAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAAC 1880 Query 111019 AGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGC 111077 | || || ||||||||| | || | || | || |||||| | ||| || || | || Sbjct 1879 AACGTTGGCGTCGCATGAGT-AAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGC 1821 Query 111078 GGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGT 111137 | | | || || ||| ||||| | ||||| ||||| | | | ||| || Sbjct 1820 CGCTTGAATATTGTTCTTGTGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCG 1761 Query 111138 TTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAA 111197 || | | ||||||| |||||| || || | ||||| || || |||| || || Sbjct 1760 CTCCACGACTTTTCCATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAA 1701 Query 111198 GTATCCAAAATCGAAATCACGATC 111221 || || | || || || || || Sbjct 1700 ATAGTCATACTCAAAGTCCCGGTC 1677 >seq618 Length=38598 Score = 132 bits (146), Expect = 6e-26 Identities = 335/502 (67%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||||||||||||||| | | ||| | ||||||||||| | ||||| ||| | ||| Sbjct 21027 TCGAAACGACCTGGGCGCAAGATAGCCTTGTCAAGAATATCAGCGCGGTTCGTACCAGCA 21086 Query 11566 ATGACTACAATGCCAGTCTCATTG--TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGA 11623 | || || | || || | | | | |||||| ||||| || || | |||||| | Sbjct 21087 AGCACCACCACACCT-TCGC-TCGAATTGAAACCATCCATCTCAACTAGCAACTGGTTAA 21144 Query 11624 TCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC-----C 11678 ||| | ||| ||||| || ||| | | | | | || ||||| | | | Sbjct 21145 GCGTGTTTTCGCGCTCGTCATTGCCGCCCG-AGAAGTTACCCTT-GCTTCGTGCACGCGC 21202 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 || || || || ||||||||||| ||||||||||| || ||||| |||| | || Sbjct 21203 CACTGCATCGATTTCATCGATGAACACGATACACGGAGCATTTGCACGAGCCTCCTTAAA 21262 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 || ||||| || || || || || |||||||||||||| | ||| | | | || Sbjct 21263 CAGATCACGCACGCGTGACGGACCCACGCCTACGAACATCTCGATGAAATCCGACCCCGA 21322 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | || ||| || ||| ||| |||||||| |||| || | || |||||||| Sbjct 21323 AATGCTAAAGAATGGCACACTAGCTTCACCAGCTGTGGCCTTCGCCAACAGCGTCTTACC 21382 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 ||||||||| | |||| | || || || || || |||||||||||| | | | | Sbjct 21383 CGTACCAGGCGGACCAACAAGCAGCGCCCCCTTAGGAATCTTGGCACCAAGGTCCATGAA 21442 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGAT 11978 |||| | || ||||||||||||| |||| | |||| |||||| ||| | Sbjct 21443 ACGCTTCTGGTTGCGAAGGAAGTCCACAAACTCCATGATCTCCTTCTTGGCCTCGTCCAC 21502 Query 11979 ACCCTCAACATCGGTGAAACGA 12000 ||| | ||||| | |||||| Sbjct 21503 ACCGGCCACATC-CTTAAACGA 21523 >seq963 Length=117303 Score = 120 bits (132), Expect = 4e-22 Identities = 327/499 (66%), Gaps = 5/499 (1%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 |||||||| ||| || ||||| || ||||| ||| |||||||| || || | |||| Sbjct 41377 CCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCAGACCACGTTTC 41318 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||||||||| | || || ||||| ||||| ||||| || || | || || Sbjct 41317 TTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTACCGAAGCAAAC 41258 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACTTGAGAGCCCAGTT 119689 || |||||||| || || | | | || || ||| |||||||||| ||||| || Sbjct 41257 GCCAATAGACGTTCCGCGTACGAT-GACACACGGGGGTCACACCACTTGAGTGCCCAATT 41199 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGC 119749 ||| || || | || |||| || | || || | || || | || || | Sbjct 41198 GGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGATCTTTCTCTAC 41139 Query 119750 ACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATT 119809 | ||| |||||||||| ||||||| || || ||| ||| |||| | || | Sbjct 41138 AGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGAATATTCTCGAT 41079 Query 119810 GTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATT 119869 ||| | | ||||| |||||||||| | | ||||||||| | ||| || Sbjct 41078 AGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTAAAGTT 41019 Query 119870 GTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTT 119929 || || ||| ||| ||||| ||||| | || || || || | | | ||| Sbjct 41018 CATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTT 40959 Query 119930 TATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGTC 119989 || || | ||||||| || | ||||||||||| || | | ||| | |||||| Sbjct 40958 AATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTC 40899 Query 119990 CACCTCTTCAGCTGTCCAG 120008 | |||||| ||||||||| Sbjct 40898 GAGCTCTTCGGCTGTCCAG 40880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588946102105800