Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq642 96.9 4e-15 >seq642 Length=28218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 237/353 (67%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 ||||| || ||||| || | || || ||||| ||||| || || || ||||| | Sbjct 15326 CCCGTTCCAATACCGTCACTGCCGTTAACGAGTACCATGGGGATAACCGGAATGTACCAC 15385 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 || ||||| ||||| | || || || ||||| || || || | | ||| ||||| Sbjct 15386 TCCGGTTCGATTGACTGGCCGTCTTCGTCCAAATACTTCAGCACATCATTGTCCAGAGGA 15445 Query 168411 TCAAAGA-TCTT-GCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGT-CTGAGAA 168467 ||| ||| ||| ||| | | || || ||||||||||| || | | ||| | Sbjct 15446 TCATAGAGTCTACGCGTGAGTTGTTCCAAA--TTTGTGAAAATATAACGAGAGCTG-GCC 15502 Query 168468 GCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATG 168527 |||||||| |||||||| | |||||||||||| ||||| || ||||||| |||| Sbjct 15503 GCATCCTTGCCACCCATTAAACGCGTACCAAACTGACCGATGGGCGACAGAAGGTGAATG 15562 Query 168528 TTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCA 168587 ||||| || | | || | ||||| || || || | || || | ||| Sbjct 15563 TTGTTGCTTCCGACGAAATCCTGTGCCATATTCACGATACAGCCCTGCAAACTTTGTTCG 15622 Query 168588 CCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTT 168640 || || ||||||||||| | || | || || | ||||||||||| ||||| Sbjct 15623 CCGTGATGGTACGCAGAGTGTTCTGACACGTAGCCAGCCAGTTGTGCGACCTT 15675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589950851099640