Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3952 159 3e-33 seq3526 138 9e-27 seq122 134 1e-25 seq325 127 2e-23 seq162 127 2e-23 >seq3952 Length=25278 Score = 159 bits (176), Expect = 3e-33 Identities = 372/556 (67%), Gaps = 25/556 (4%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||| | || || || || |||||| ||||| ||| || ||||| | || Sbjct 7128 TATTGGTATTGATCTTGGTACTACGTACTCTTGTGTGGGTGTGTGGAAAGATGGTCAGGT 7187 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 || || ||||||||| | | || ||| | || || || || | ||| | |||| || Sbjct 7188 GGAGATCATTGCCAATAGTGAGGGAAACCGTACGACCCCTTCATGGGTTGCATTCAATGA 7247 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || ||||| | | ||||||| ||||| || |||||| |||||||| |||| || || Sbjct 7248 AAGTGAACGTCTCATTGGTGAAGCAGCTAAGATTCAAGCAGCTGGTAATGCTACGAACAC 7307 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 | |||||||| |||||| | |||||| | || |||| |||| | || ||| ||| Sbjct 7308 GGTGTTTGATGCCAAACGTATCATTGGACGCAGCTTTAGTGATGA-AGTGGTCA---AGA 7363 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAA-ACCTTATATTGAAGCTA 550292 | || ||| ||||||| || | | |||| | || | ||| | Sbjct 7364 AA-GATGCAAAACACTTTCCA-----TTTACCATCAAGGAAGGAGACGATGAT-AAGGTC 7416 Query 550293 CTCATGAAGGATCTGTT---------AAACAA----TTTTCACCAGAACAAATTTCATCT 550339 || || ||| | ||| ||| || ||| | || ||| | || || || Sbjct 7417 CTGATTGAGGTTGAGTTCAAGGGAGAAAAGAAGAGTTTTACTCCTGAAGAGATCTCGTCG 7476 Query 550340 ATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGAT 550399 ||||| || | ||||| ||||||| |||||| ||||||| | | | Sbjct 7477 ATGGTGCTACTACGTATGAAGGAAACAGCAGAAGCTTTTCTTGGTCAGACCATCTCACAG 7536 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || | |||||||| || ||||| || ||| ||| |||||| |||| ||||||||| Sbjct 7537 GCTGTTGTTACTGTACCTGCTTATTTCAACGACCAACAGCGTCAATCTACCAAAGATGCT 7596 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||| || |||| ||||| || |||||||| || |||||||| ||| Sbjct 7597 GGTTCGATTGCTGGTCTGGATGTCAAACGTATCATTAATGAACCGACGGCTGCTGCCCTT 7656 Query 550520 GCATATGGACTTGATA 550535 || ||||| || |||| Sbjct 7657 GCCTATGGTCTAGATA 7672 >seq3526 Length=47547 Score = 138 bits (152), Expect = 9e-27 Identities = 330/494 (67%), Gaps = 9/494 (2%) Strand=Plus/Plus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || ||||| || |||||||||||||||||||| | | || || ||||| ||| ||| Sbjct 5716 AAGGTTGAGATCATTGCCAATGATCAAGGTAATCGTATCACGCCTTCTTACGTTGCTTGG 5775 Query 550109 -ACGGAAAC--TGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCT 550165 || ||| ||| | ||| ||||||||| ||||| ||||||| || |||||| Sbjct 5776 GACTCGAACGATGAGCGTTTGATTGGTGATGGTGCAAAGAATCAAGCTACGATTAATCCG 5835 Query 550166 ACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTT 550225 || || | || |||| || ||| | ||||| | | | ||||| | | || Sbjct 5836 GAGAAGACGTTGTTCGATGTCAAGCGTCTGATTGGTCGTAAATACAATGACAAGTCGGTC 5895 Query 550226 CAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATT 550285 || | || | ||| | ||||| || | ||||| ||||||||||| |||| Sbjct 5896 CAATCGGACAAAAAGTTGTTGCCTTATGAACTCATTAATAAAGATGGAAAACCTTTTATT 5955 Query 550286 GAAGCTACTCATGAAGGATCTGTTAAAC---AATTTTCACCAGAACAAATTTCATCTATG 550342 ||| ||| | |||| | | |||| ||||| | || ||| || | || | ||| Sbjct 5956 CAAGTGACTG-TCAAGGGTGAG--AAACGTCAATTTGCTCCTGAAGAAGTCTCTGCCATG 6012 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402 || || | || ||||| || | | | | |||||| ||||| ||||| Sbjct 6013 GTCTTGACAAAGATGAAGCAGATTTCGGAAGGATACATTGGTCGTGAAGTGTTTGATGCT 6072 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || | || || || || || ||||| ||| | |||||||||||||| || |||||||| Sbjct 6073 GTTGTGACAGTCCCTGCTTACTTTAACGACGCTCAACGTCAAGCTACAAAGGATGCTGGT 6132 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 |||||||| || | |||| || || || |||||||| || |||||||| |||| Sbjct 6133 ACCATTGCTGGTCTGACCGTTCAACGGATCATTAATGAACCGACAGCTGCTGCTATTGCC 6192 Query 550523 TATGGACTTGATAA 550536 ||||| |||| || Sbjct 6193 TATGGCATTGACAA 6206 >seq122 Length=47329 Score = 134 bits (148), Expect = 1e-25 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || ||||| || |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 19502 ACGGTACCGGCTTATTTTAATGACTCACAACGTCAAGCTACTAAGGATGCTGGTAAAATT 19443 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| || | || ||||| || |||||||||||||| |||||||| ||||| ||||| Sbjct 19442 GCTGGTCTGGACGTACTTCGGATCATCAATGAACCTACAGCTGCTGCCCTTGCCTATGG 19384 >seq325 Length=14119 Score = 127 bits (140), Expect = 2e-23 Identities = 367/556 (66%), Gaps = 14/556 (3%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 || |||||||| ||||| || | || || || |||||||| || || || || | Sbjct 8203 TGCGTTGGTGTCTGGCAGAACGACCGTGTGGAGATCATTGCCAACGACCAGGGAAATCGC 8262 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || || || || | |||||||| || |||| | || | |||||||| || || Sbjct 8263 ACGACGCCGTCGTACGTGGCGTTCACGGACACGGAACGTCTAATCGGTGATGCTGCCAAG 8322 Query 550145 TATCAAG---CCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 |||||| ||| || ||| | |||||| | ||||| | ||||| || ||||| Sbjct 8323 AATCAAGTGGCCA-TG--AATGCCCACAATACGGTGTTTGACGTCAAACGCTTGATTGGG 8379 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 | | |||| |||| | || ||| | || || ||||| ||||| ||| | | | | Sbjct 8380 CGCAAGTTTACTGATCCAGAAGTACAGTCGGACATCAAGCACTGGCCGTTCAAGGTCGCT 8439 Query 550262 AATGTTTCTG-GAA--AACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTT 550318 | | ||| ||| ||||| | | || | | | | || | | || | || Sbjct 8440 CGCGGTCCTGAGAACAAACCTCA-AGTGGTGGTGCAATTTAAAGGGGAGACCAAGACGTT 8498 Query 550319 TCA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTT 550377 || || ||| | || || |||||||| |||| || ||| | | || |||| Sbjct 8499 CCAGCCCGAAGAGATATCGTCTATGGTGCTAATCAAGATGCGCGAGATCGCGGAGGCTTA 8558 Query 550378 TGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| | |||| | | ||||||| | || || || || || ||||| ||||| || Sbjct 8559 CATTGGTAAGCAAGTGAAGAATGCAGTGGTTACGGTCCCTGCTTACTTTAACGACTCGCA 8618 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||| || || ||||| || ||| |||||||| | || || | ||||||||||| Sbjct 8619 GCGTCAGGCGACCAAAGACGCCGGAGCCATTGCTGGTTTGAACGTATTGCGTATTATCAA 8678 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAA 550557 || || ||||||||||| | || || || | || ||| || | | || | || Sbjct 8679 CGAGCCGACTGCTGCTGCTATCGCCTACGGTTTGGACAAA---AAGGGTGGCGAGCACAA 8735 Query 550558 TGTACTCATCTTTGAT 550573 ||| |||||||||||| Sbjct 8736 TGTGCTCATCTTTGAT 8751 >seq162 Length=3807 Score = 127 bits (140), Expect = 2e-23 Identities = 342/517 (66%), Gaps = 7/517 (1%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 || || ||||| ||||| || | || || |||||||| || || ||||||||| | Sbjct 1755 TGCGTCGGTGTGTGGCAGAACGACCGCGTAGAGATTATTGCTAACGACCAAGGTAACCGC 1814 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || || || || | |||||||| || || | | | |||||||||| || || Sbjct 1815 ACGACGCCGTCCTACGTGGCATTCACGGACACGGAGCGTCTTATTGGTGATGCCGCTAAG 1874 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG- 550203 | |||| || || | ||| || | || || || || || | ||||| | Sbjct 1875 AACCAAGTGGCTATGAACGCACACAACACGGTGTTCGACGCCAAGCGCCTCATTGGTCGC 1934 Query 550204 AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAA 550263 ||||||| || ||| ||||| || || | |||||| ||||| || || | Sbjct 1935 AAGTTTTCG-GACCCGATCGTTCAAGCTGACACGAAGCACTGGCCATTTAAAGTCACGTC 1993 Query 550264 TGTTTCTGGA---AAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTC 550320 || | | || || || | ||| | | | | | |||| || ||| | || | Sbjct 1994 TGGTGCCGGTGACAAGCCACAGATT-ACGGTGCAATTCAAGGGCGAGTCAAAGACGTTCC 2052 Query 550321 A-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 | || || | || || || ||||| | || || ||| | || ||||| Sbjct 2053 AGCCTGAGGAGATCTCGTCCATGGTCCTGATTAAGATGCGTGAGGTGGCGGAAGCTTTCA 2112 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | || | || || | | ||||||| || || ||||| || ||||| |||||||| || | Sbjct 2113 TCGGCAAGGAGGTGAAGAATGCAGTGATTACGGTACCGGCCTATTTCAATGACTCGCAGC 2172 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 ||||||| || || || || || ||||||||||||||||| || ||||||||||| | Sbjct 2173 GTCAAGCCACCAAGGACGCCGGTGCCATTGCTGGACTTAATGTGCTCCGTATTATCAACG 2232 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| || |||||||| |||| ||||| || || || Sbjct 2233 AACCGACGGCTGCTGCTATTGCCTATGGTCTGGACAA 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029081236004890