Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1704 132 4e-26 >seq1704 Length=9670 Score = 132 bits (146), Expect = 4e-26 Identities = 436/664 (66%), Gaps = 19/664 (3%) Strand=Plus/Plus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 || || || ||||||| || |||| || ||||| || | | |||| ||||| || Sbjct 3005 AGTGGCTCTACGTGATTCAAATAGATATGCGCGTCACCAATGACATGGATGAACTCGCCA 3064 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 |||| || || || || || | || ||| || | | |||||||| || ||| Sbjct 3065 GGTTTCAGTCCTACCACTTGCGCGACCAAACGCGTTAGCAACGCATAGCTGGCAATATTA 3124 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982 || || || || || |||||||| |||| | |||||| | ||| ||||| || || || Sbjct 3125 AATGGCACACCTAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAGTTCGCCA 3184 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 || ||||||||||||||| | ||||||||||||| | ||||| | || Sbjct 3185 TCCGCCACGTAAAACTGACAAAACATGTGGCACGGAGGTAACGCCATTTCATTTAGATCA 3244 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30102 || ||||| || ||| | || || | ||| ||||| |||| | ||| | Sbjct 3245 GCCGGATTCCAAGCTGACAGCACAATTCGGCGGTC-ACTGGG--GTTCGTACGGAGCT-T 3300 Query 30103 ACGG----CGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT 30158 | || | | ||||| ||||| || || ||||| || ||||||||| Sbjct 3301 ATGGATAACATCGGCAAGCTGGTCCACGCCTTGGCCTCTATAGTCGGCGTGCATGTCCGT 3360 Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 ||||| || || ||||| | ||| || || ||||| |||||||| || |||||| | || Sbjct 3361 GTACTTGGCACCAAAATGACGCCATTGAAAACCGTATACCGGTCCAAGATCTCCCACCTC 3420 Query 30219 CCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 | ||| | | ||||| || ||||||| | || | || || ||| |||||||||| Sbjct 3421 AC-GTGATTGCAGCCCTCTACTGTCCAAGTACTCGCGCGATCCATTGCCGTCCCAGATGG 3479 Query 30278 TTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 30336 | ||||| | || ||| | | |||||| || || | ||||||||||| | Sbjct 3480 AAATATTCTTCTGCTGA-AGCGTGTGAGCATTTGTGTCACCACTAATGAACCACAGCAAC 3538 Query 30337 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA--GGGGAAACTGTC-CC 30393 || || | || | |||||| || |||| ||||| || | ||| | || || || Sbjct 3539 TCTTCGGCCACACCTCGCCAAAACACTTTCTTCGTCGTCAGCAACGGGAAGACATTCTCC 3598 Query 30394 TTGAGGCCGTACATGGC--CTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGT 30451 | || | || || | ||| | |||||||| ||||| || ||||| || | || Sbjct 3599 CTCAGAC--TAAATCTCATCTGCGCTCCAAACACAGACAACGTCCCGGTGCCTGTTCGGT 3656 Query 30452 CTCC 30455 |||| Sbjct 3657 CTCC 3660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408597376110353