Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3725 129 7e-25 seq642 100 3e-16 >seq3725 Length=16789 Score = 129 bits (142), Expect = 7e-25 Identities = 467/722 (65%), Gaps = 9/722 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||| | || || || || ||||||| |||||||| | ||||| || Sbjct 1680 CGGGACTTTGAGTATGACTATTTCGGATTCAAAACACTTGAGAAAGGATATCTCTTTCGT 1739 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | |||| | || |||| || || | | | ||||| || || | || ||| Sbjct 1740 GTTAATGGAAAAGTCGTGGAGCGACCGCAACAATTAATTATGCGCGTTGCTTTAGGTATC 1799 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTT 75306 ||| | | | ||| | | | |||||||| ||||| |||||| || | || | || Sbjct 1800 CACAAGAACAATATTCAAGCGGCTTTGGAGACGTACGAGTTGATGTCTCAGAAGTTTTTT 1859 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTG 75366 | ||| || || ||||| | || |||||||| || || | || || ||||| || Sbjct 1860 -ACTCATGCGACGCCAACGTTGTTTAATGCTGGAACTCCTCGCCCCCAACTGTCCTCGTG 1918 Query 75367 CTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG 75426 || | | || | |||| || || || | ||||| |||| || | | | | || Sbjct 1919 TTTTTTACTAGCTATGCAGGATGATTCGATTGAAGGTATTTATGACACATTGAAGCAATG 1978 Query 75427 TGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAA 75486 |||| || || || |||||||| || ||||| || || || | | |||||| Sbjct 1979 TGCGTGCATTTCCAAATGGGCTGGTGGGATTGGCATTAGTATGCACAACATACGAGCCAC 2038 Query 75487 TAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 ||| | || |||||| || || |||||| || | || || ||||| ||| | || | Sbjct 2039 TAACAGCTA-TATTCGTGGCACTAATGGTTCCTCTAACGGGATCATTCCCATGTTACGGG 2097 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCG 75602 | ||||||| ||| || || || || | |||| || | ||||| || ||| | | Sbjct 2098 TGTTTAACGACACGGCCCGATACGTGGACCAAGGTGGAGGCAAACGCAAAGGATCCTTTG 2157 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACC 75662 | | |||||||| || ||||||||||| | | ||||| || || | || |||| Sbjct 2158 CTATATACTTGGAGCCGTGGCATGCCGACGTGTTTGAGTTTCTAGACCTGCGTAAAAACC 2217 Query 75663 AAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 | ||| | ||| | || | || | || | | || |||||||| || || | Sbjct 2218 ACGGTAATGAATTGCACCGAGCGCGTGACTTATTCTACGCTCTATGGATTCCTGATCTGT 2277 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAG 75782 | ||||| ||||| || | ||| | ||| | | |||||||| || | || || | Sbjct 2278 TTATGAAACGGGTGGAAGCTAATGGCAAGTGGAGTTTATTCTGTCCGAACGAAGCTCCTG 2337 Query 75783 GTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAG 75841 ||||| ||| || | ||| || ||||| || | || || |||||| ||| ||||| Sbjct 2338 CTCTCTACGAGTGCTG-GGGAGACGAGTTCGAGACGCTTTATGAAAAGTACGAAAAGGAG 2396 Query 75842 GG 75843 || Sbjct 2397 GG 2398 >seq642 Length=28218 Score = 100 bits (110), Expect = 3e-16 Identities = 239/355 (67%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 14432 AAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTA 14491 ||||| ||||||||||| | || || | || | ||||||||||| || || ||| | Sbjct 15675 AAGGTCGCACAACTGGCTGGCTACGTGTCAGAACACTCTGCGTACCATCACGGCGAACAA 15616 Query 14492 TCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAAC 14551 || || | || || || ||||| | || | | || ||||||||| || Sbjct 15615 AGTTTGCAGGGCTGTATCGTGAATATGGCACAGGATTTCGTCGGAAGCAACAACATTCAC 15556 Query 14552 CTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG 14611 ||||| || ||||| |||||||||||| | |||||||| |||||||| | ||| Sbjct 15555 CTTCTGTCGCCCATCGGTCAGTTTGGTACGCGTTTAATGGGTGGCAAGGATGCGGC-CAG 15497 Query 14612 -ACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGC-AAGA-TCTTTGATCCTCGG 14668 | | || ||||||||||| || || | | ||| ||| ||| |||||||| | Sbjct 15496 CTCTCGTTATATTTTCACAAA--TTTGGAACAACTCACGCGTAGACTCTATGATCCTCTG 15439 Query 14669 GATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTTTAC 14728 || | | || || || |||||||| || || | || || ||||| || | ||| Sbjct 15438 GACAATGATGTGCTGAAGTATTTGGACGAAGACGGCCAGTCAATCGAACCGGAGTGGTAC 15379 Query 14729 ATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || || | | || ||||| ||||| || || | || ||||| || ||||||| Sbjct 15378 ATTCCGGTTATCCCCATGGTACTCGTTAACGGCAGTGACGGTATTGGAACGGGTT 15324 Score = 96.9 bits (106), Expect = 4e-15 Identities = 243/358 (68%), Gaps = 30/358 (8%) Strand=Plus/Minus Query 13548 TTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAG- 13606 |||| ||||||||||| ||||||| || || | || ||||| || || | |||| Sbjct 16690 TTACTGGTATTCCCAAACTGGATGATGCCAATCACGCTGGTACAGCGAAA--AGCAAAGA 16633 Query 13607 -TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTC 13665 || ||||| ||| | ||||| || ||||| || ||||| | || |||| || || | Sbjct 16632 TTGCACTCTGATTCTAACAGAAGGCGATTCCGCCAAAACTGTTGCTGTTGGTGGCCTTGC 16573 Query 13666 TGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTTC 13724 ||||||||| | ||| |||| ||||| |||||| | || ||||| ||| | || |||| Sbjct 16572 TGTCGTTGGCAGAGATTACTATGGTGTTTTCCCATTGCGAGGTAAGATGCTA-AACGTTC 16514 Query 13725 GGGACGCTTCGGTGGCACAGCTCACAT-----CAAACCAGGAG-TTC--AACGATCTCAA 13776 | || || | |||| |||| || || ||||| ||| |||| || Sbjct 16513 GTGAAGC----AAGTCACA-CTCAAATTTTGAAGAATGAGGAGATTCAAAACGTGGTC-- 16461 Query 13777 GAAGATCCTTGGTCTTCAACAAGGAAAAGACTACCAAGATGTTTCTGAA---CTT-CGCT 13832 |||||||||||||| | | || || ||||| | || | ||| ||| | | Sbjct 16460 -AAGATCCTTGGTCTCAAGTACGGCGAAAACTACGA----GTCTACGAAGGGCTTGAGGT 16406 Query 13833 ATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCT 13890 |||||| | ||||| ||| ||||| ||| | || || ||||||||||||||| Sbjct 16405 ATGGTCACTTGATGATCATGGCAGATCAAGATCACGACGGCAGTCACATCAAGGGTCT 16348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596539316635680