Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3454 91.5 3e-13 seq977 89.7 1e-12 >seq3454 Length=44902 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || | |||| || | ||| || |||||| || || Sbjct 22 ATACCACCACGCAGGCGGAGCACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCC 81 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || ||||||||||| | | ||| || ||||| Sbjct 82 GACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGC 141 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || | || || || || ||||| |||||||| Sbjct 142 GGGATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAATCAGACGATTCC 201 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || || || || || | ||| || | ||| |||||||| || Sbjct 202 ACCTCCAGCGTGATCGTCTTGCCCGTCAGTGTCTTGACAAAAATCTGCATCTT 254 >seq977 Length=24603 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || || || | ||| || |||| |||| || || ||||||||||| | | Sbjct 11096 ATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGT 11037 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || |||||||| || ||||| || || || ||||| | || ||||| || | Sbjct 11036 TGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCAG 10977 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||| || || || | ||||||||| || || || || || || | ||| |||||| Sbjct 10976 TCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAAAGATCTGC 10917 Query 192535 AT 192536 || Sbjct 10916 AT 10915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984428775967350