Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq832 86.0 5e-12 seq3454 82.4 6e-11 >seq832 Length=21457 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| ||||| | || || | ||| ||||| ||||||||||| | | || | ||||| Sbjct 3913 GGACCAGCAACGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGTTAGCGGA 3854 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||||||||||||| || |||||| ||||| Sbjct 3853 CTACAACATTCAAAAGGAGTCAACCTTGCACTTGGTG 3817 >seq3454 Length=44902 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||||||||| || | || ||||| || || || | || ||| | Sbjct 254 AAGATGCAGATTTTTGTCAAGACACTGACGGGCAAGACGATCACGCTGGAGGTGGAATCG 195 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| | | | | | || || ||||||||| || || |||||| | || || Sbjct 194 TCTGATTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCGCCTGAC 135 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||| || || |||||||| |||| || || |||||||| Sbjct 134 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGTCGTACGCTGTCGGACTAC 75 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || || |||||||| ||| | ||| ||||| Sbjct 74 AATATCCAGAAGGAGTCGACGCTACACCTGGTG 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398857058216029