Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3725 150 2e-31 seq3454 125 7e-24 seq977 105 6e-18 >seq3725 Length=16789 Score = 150 bits (166), Expect = 2e-31 Identities = 905/1423 (64%), Gaps = 50/1423 (4%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| || ||||| |||||||| || ||| | ||| ||||| ||||| || | Sbjct 3485 GCGCATGTAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGG- 3427 Query 148013 CATGAGCGT---GTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 |||| | | |||||||| |||| | | |||| |||||| |||||| || Sbjct 3426 --TGAGTTTACTGATCGTCGGGT-CGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAA 3370 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 || | || ||||||||||| | || || | | || ||| | ||| || ||||| | Sbjct 3369 TGTAAGCACCACGGTCAGCCGACAGATCTAACAC-CGATTTCTGCTTGATTTCCCACACT 3311 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGC----TGCACCGAGCC 148183 || |||||| | |||| ||| || |||||| ||| | | | ||||| || || Sbjct 3310 GTTTTGTACTTCTCTTTGACATGGTCCGGAATG--GTC--TTCACCTTTTGCACAGAACC 3255 Query 148184 GCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTC 148243 |||| | ||||| || || | ||| ||| | | | || |||||||| || Sbjct 3254 ACGGTCGTTCAGTATCTGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTC 3195 Query 148244 ATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACAC 148303 | ||||| |||| ||||| | | ||||| || || ||||| || || |||| Sbjct 3194 TTTCATCAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACAT 3135 Query 148304 GTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGT 148363 ||| ||| |||| || | ||||||||||| || | ||||| || |||| || || Sbjct 3134 GTTCGACGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGT 3075 Query 148364 GGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAG 148423 ||||| || || |||| |||||||| | ||| | || | | || ||||| Sbjct 3074 AGGCATAGGAGCCACTAGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAA 3015 Query 148424 AGCCGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 || | ||||||||| || | ||||| || || |||||||||| |||| | || Sbjct 3014 GGCGGTCCAGTCCCAAAGACCAGAGGACGGGGTGACACCCCACATGTCGAACTGGAAGAT 2955 Query 148481 GCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTC 148540 || ||| || ||| ||||| | | |||||| || | | || | || Sbjct 2954 ACCCTTGCTGGCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTC 2895 Query 148541 GCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CAGC 148598 | | ||| | || | || || || ||||| ||| | | |||| || || | Sbjct 2894 CATGGATGTCTCCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCA-C 2836 Query 148599 GCCGCCGACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTG 148657 | ||| |||||||||| || ||||| || | | || || ||||| || ||||| Sbjct 2835 G-AGCCTGCTCGCTTTCGAAC-GCATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTG 2778 Query 148658 TACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGCGGAT 148716 || || | ||| | || ||||| |||||||| || || |||| | | ||| | Sbjct 2777 AACACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGC-CTCTGCAACCGGGT 2719 Query 148717 AGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCA 148776 ||| |||| ||| || | ||||| ||| || || |||||||| || | || Sbjct 2718 AGTAGTTGACGTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTCACATCATACA 2659 Query 148777 GCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTA 148833 || | | ||| | ||| || || | | | ||| | || | ||| || | Sbjct 2658 GCTTCTTGTAGTCGAAGACACCGTCCTCCAC-AAACTTAGGT--AAAGCCACAGACGCCA 2602 Query 148834 GATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGC 148893 |||||||||||| ||||||||| | | ||||| | | ||| ||||| || | Sbjct 2601 AGTTGCACACGGCCACCTCATCCGGCGACGTATACTCCATTACCTCACAGCACAAGTTAC 2542 Query 148894 TGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACA 148953 || || |||| ||| | |||| || ||| ||| | |||| |||||||| | | Sbjct 2541 TGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGA 2482 Query 148954 GCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTA---TGAACCGATGCAGGTCCT 149010 |||| | || |||| || || | ||||| || | | |||||| || || | || Sbjct 2481 GCATAAATGGCACGCCCGTCTCAATCTGCGCATCTAAAATGCTGAACC-AT--AGCTGCT 2425 Query 149011 GCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCG 149069 |||| | | | ||| | ||| ||||||| ||||| ||| ||| |||| Sbjct 2424 GCGCATTAATTGTCTTGCGAG-CGCGTCCCTCCTTTTCGTACTTTTCATAAAGCGTCTCG 2366 Query 149070 AACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCAC 149129 ||| | || || |||| |||| |||| | || | || ||| || | | |||| Sbjct 2365 AACTCGTCTCCCCAGCACTCGTAGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCAC 2306 Query 149130 ACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGG 149189 ||| | || | ||| || |||||||||||||| || | ||| || ||||| | | | Sbjct 2305 TTGCCATTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAG 2246 Query 149190 T--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATA 149247 | ||||| | |||| ||| || ||| ||||||| || | || | Sbjct 2245 TCACGCGCTCGGTGCA--ATTCATTACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACA 2188 Query 149248 TGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCT 149304 ||| || ||||||||||| | ||| | || | | || ||||| ||| || || | Sbjct 2187 CGTCGGCATGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTT 2128 Query 149305 GGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||| |||| || || ||| ||||||||| || | ||| || Sbjct 2127 GGTCCACGTATCGGGCCGTGTCGTTAAACACCCGTAACATGGG 2085 >seq3454 Length=44902 Score = 125 bits (138), Expect = 7e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCT 133515 |||| || ||||| ||||| |||||||| || || ||| |||| ||| || |||| Sbjct 49 TGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGACAGCGT--ACGACCGTCTTCCAGCT 106 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| || ||||||||||||||||| |||| Sbjct 107 GCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGAATCT 166 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 ||||||| | | |||| || || | | ||||| || | |||| || ||||| | Sbjct 167 TTTGCTTCACGTTGTCAATCGAATCAGACGATTCCACCTCCAGCGTGATCGTCTTGCCCG 226 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 227 TCAGTGTCTTGACAAAAATCTGCAT 251 >seq977 Length=24603 Score = 105 bits (116), Expect = 6e-18 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||| |||||||| || | | ||| ||| || || ||||||||||| || | | Sbjct 11102 TTCTGAATATTGTAGTC--CGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 11045 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 | || || |||||||| || || || ||||||||||| ||| || ||||||| | | Sbjct 11044 TCAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 10985 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 ||| ||||| ||||||||||| | || | ||| ||||| |||| ||| || || | Sbjct 10984 CAATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAA 10925 Query 133651 AAATCTGCATG 133661 | ||||||||| Sbjct 10924 AGATCTGCATG 10914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483396260351640