Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq963 105 8e-18 seq1316 100 4e-16 >seq963 Length=117303 Score = 105 bits (116), Expect = 8e-18 Identities = 307/460 (67%), Gaps = 11/460 (2%) Strand=Plus/Minus Query 129717 CCAGC-TTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 129775 ||||| ||| ||| || || || || |||||||| ||||| ||||| || | | | Sbjct 41695 CCAGCCTTGGAATACTCGCCCACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGCGAG 41636 Query 129776 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT--CCAATCT 129833 || | ||||| | || ||||| ||||| | | |||| ||||| ||| | Sbjct 41635 ATCATATCCATCCAGTCGAATGGATTCTTGGCATGATAAATCT-TGGCAACACCCAGTGA 41577 Query 129834 GTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATAC 129893 || | || ||||| || | ||| |||||||||||| | |||| | |||||||| | Sbjct 41576 GTAT-AGCAGACGGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGC 41518 Query 129894 CGATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCC 129952 | ||||| | ||| ||||||| ||| | ||| | | |||||| |||||| || Sbjct 41517 CAATGAGCTCGACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCA 41459 Query 129953 CGCACGATGGCGTGAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC 130011 || | || |||| | | ||| || || | | || || || | | | | Sbjct 41458 CGAATAATCTCGTGCACACGACTCGCTGGCAATT-TGTTAACCAGTTTCGAGTACA-TGA 41401 Query 130012 CACG-GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 130070 || ||||| ||| ||| | ||| || ||||| || || || |||||||||| | Sbjct 41400 GACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAA 41341 Query 130071 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 130130 |||| ||||| ||||| || ||||| | ||| || || | || || ||||||||||||| Sbjct 41340 GACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGA 41281 Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC 130170 | || || || || | || ||||| || ||||| || || Sbjct 41280 AAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGC 41241 >seq1316 Length=31230 Score = 100 bits (110), Expect = 4e-16 Identities = 197/287 (69%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 179779 CCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGA 179838 || ||||||||||| || |||| |||| ||||||||| |||| || |||||||| Sbjct 19878 CCTTTAATGTGTGAGCCGTCGTGATCCTGATCCGTCATGGCAATAACGCGGCCATAGCGC 19819 Query 179839 AGCT-CGGAAA------CATCTTG--ATAATCCTTA-CCTTGTTGAAGACCCAAGATCTT 179888 || | | || | || || |||| || || || ||||||| | |||| | Sbjct 19818 AGTTTCTGACGTGCTTCCTTCGTGTCATAACGCTCGTCCATGC-GAAGACCAAGGATCGT 19760 Query 179889 CTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATT 179948 ||||| ||||| ||| |||||||||||| || ||||| || ||||| Sbjct 19759 GCAGAGATGTGCAAACTCGGCATTTTTACCGAGTTGCGCCACAGACGCATCGCGCACATT 19700 Query 179949 TTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACC 180008 | || ||||||||||| || |||||||| || ||||| || || || | ||||| Sbjct 19699 CAAAAGTTTGCCACGGAGAGGAAAGACACCGTACTGGTCACGCCCGACAACTGCAAGACC 19640 Query 180009 AGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCG 180055 || ||||| || | ||| || || ||||| || |||| ||| |||| Sbjct 19639 TGCCACTGCTAGTGCCTTTGCTGAGTCACCTTCGGTCAGGATAAGCG 19593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618403806683160