Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3725 185 1e-41 seq963 176 5e-39 >seq3725 Length=16789 Score = 185 bits (204), Expect = 1e-41 Identities = 886/1386 (64%), Gaps = 57/1386 (4%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||||| ||||| |||||||| || || || |||||||| || | || || Sbjct 1827 GAGACGTACGAGTTGATGTCTCAGAAGTTTTTTACTCATGCGACGCCAACGTTGTTTAAT 1886 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || ||| || |||| ||||| || | |||||| ||||||| Sbjct 1887 GCTGGAACTCCTCGCCCCCAACTGTCCTCGTGTTTTTTACTAGCTATGCAGGATGATTCG 1946 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||| || || || || || | ||| | || ||| ||| ||||| ||| | || || Sbjct 1947 ATTGAAGGTATTTATGACACATTGAAGCAATGTGCGTGCATTTCCAAATGGGCTGGTGGG 2006 Query 19346 ATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACA-CGA-ATCAATGGGACGAAC 19402 || || || ||| | || || || | | | ||| | | || ||| || || Sbjct 2007 ATTGGCATTAGTATGCAC-AACATACGAGCCACTA--ACAGCTATATTCGTGGCACTAAT 2063 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 || | |||| ||| | || ||| | || || || ||| |||||||| | ||||| Sbjct 2064 GGTTCCTCTAACGGGATCATTCCCATGTTACGGGTGTTTAACGACACGGCCCGATACGTG 2123 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 |||| || || ||||||||||| || || || || || ||| | ||||| ||||| || Sbjct 2124 GACCAAGGTGGAGGCAAACGCAAAGGATCCTTTGCTATATACTTGGAGCCGTGGCATGCC 2183 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 ||||| | || || || || ||||| ||||| ||| | || | || || Sbjct 2184 GACGTGTTTGAGTTTCTAGACCTGCGTAAAAACCACGGTAATGAATTGCACCGAGCGCGT 2243 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 ||| | ||| || | |||||||| || || || ||| | | || || |||| Sbjct 2244 GACTTATTCTACGCTCTATGGATTCCTGATCTGTTTATGAA-ACGGGTG-GAAGCT---- 2297 Query 19643 GAATGGCACCTGATGT-------GCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695 ||||||| || || | ||| ||||| |||| || ||| || || Sbjct 2298 -AATGGCAAGTGGAGTTTATTCTGTCCGAACGAAGCTCCTGCTCTCTACGAGTGCTGGGG 2356 Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCG-GTTC--AAGA-AGG 19751 || | |||| | | | || | |||| | |||| || | || |||| | Sbjct 2357 AGACGAGTTCGAGACGCTTTATGAAAAGTACGAAAAGGAGGGACGCGCTCGCAAGACAAT 2416 Query 19752 TGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGC-CAGGTCGAGACCGGCACA 19810 | | || | | | | ||| | || | | | | || ||| | ||||| ||| Sbjct 2417 TAATGCG----CAGCAGCTATGGTTCAGCATTTT-AGATGCGCAGATTGAGACGGGCGTG 2471 Query 19811 CCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCG 19870 || | ||| || |||||||| || ||| ||||| || ||| |||| | ||| || Sbjct 2472 CCATTTATGCTCTTTAAGGACGCAGCCAACCGTAAGTCCAACCAGCAGAATCTTGGCACG 2531 Query 19871 ATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCC 19930 ||| || ||| |||| ||| | |||||| | | |||||| ||| ||| Sbjct 2532 ATCCGATCCAGTAACTTGTGCTGTGAGGTAATGGAGTATACGTCGCCGGATGAGGTGGCC 2591 Query 19931 GTGTGTAATCTGGCGTCCCTGTGCCTG--CCGACTTTCGTCAAGGCCTCCTCCTTCGACT 19988 ||||| || ||||||| |||| || || | || || ||| | |||||||| Sbjct 2592 GTGTGCAACTTGGCGTC--TGTGGCTTTACCTAAGTTTGTGGAGGACGGTGTCTTCGACT 2649 Query 19989 TTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATC 20048 || |||| || ||||| ||| ||||| ||||| || || || || || Sbjct 2650 ACAAGAAGCTGTATGATGTGACGAAGGTGGTCACCCGTAACCTTAACAAGGTTATTGACG 2709 Query 20049 GGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGA 20108 |||| |||||| | | ||| || ||||| || ||||||||||| || | | | Sbjct 2710 TCAACTACTACCCGGTTGCAGAGGCTCGAAAGTCCAACATGCGCCACCGCCCTGTGGGCA 2769 Query 20109 TCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCT-CATTCGA---CGAT 20164 | || || ||||| |||||||| | |||||| | | | || | | ||||| ||| Sbjct 2770 TTGGTGTTCAGGGTCTGGCCGATGCTTTCATTCTCAT-GAACTATGCGTTCGAAAGCGAG 2828 Query 20165 CCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTG 20224 | |||| || || || |||||| || || ||| || | || | || | | | Sbjct 2829 C---AGGCTCGTGAACTGAACAAGAATATTTTTGAGACCATCTATTATGCTTCGATGGAG 2885 Query 20225 GAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCG 20284 ||| || | |||||||| |||||||||||||| || |||| || || || Sbjct 2886 ACATCCATGGAGATTGCCAAAGAACTGGGCCCGTACGAGACATTTCAGGGCTCCCCGGCC 2945 Query 20285 TCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAAT----GAGTTT----- 20335 | |||||||| ||||| ||||||||||| ||||| | | ||| Sbjct 2946 AGCAAGGGTATCTTCCAGTTCGACATGTGGGGTGTCACCCCGTCCTCTGGTCTTTGGGAC 3005 Query 20336 TGGAGCGCCCTCAAGGTTGA---GATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTC 20392 |||| |||| | |||| | ||| ||| ||||| | |||||||| ||||| || Sbjct 3006 TGGACCGCCTTGAAGGAGAACGTGATTAAG---CACGGCATCCGCAACTCTTTGCTAGTG 3062 Query 20393 GCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCG 20452 || || ||||| || || ||||| || |||||| | || ||||||||| | |||||||| Sbjct 3063 GCTCCTATGCCTACTGCTTCGACTGCTCAGATCCTTGGTAACAACGAGTCCATCGAGCCG 3122 Query 20453 TACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAG 20512 |||||| | ||||| ||| || ||| || || ||||||||| || || |||||| Sbjct 3123 TACACGTCGAACATGTACAACCGACGTGTGCTTGCTGGTGAGTTCACGATCGTGAACAAG 3182 Query 20513 CACCTG 20518 ||||| Sbjct 3183 TACCTG 3188 Score = 131 bits (144), Expect = 2e-25 Identities = 452/696 (65%), Gaps = 27/696 (4%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| ||||| | |||||||||||||| | ||||||||| || | |||||| || ||||| Sbjct 3140 GTACATGTTCGACGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGA 3081 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || || ||||| || || || || | ||| || || | || ||| || ||| || Sbjct 3080 AGCAGTAGGCATAGGAGCCACTAGCAAAGAGTTGCGGATGCCGTGC---TTAATCACGTT 3024 Query 78654 CT--TT--AGGCCGTCC-----CAAAATTCATTCGCCGCGATC---CCCCACATGTCCGG 78701 || || |||| |||| |||| || | || | | ||||||||||| Sbjct 3023 CTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGAGGACGGGGTGACACCCCACATGTCGAA 2964 Query 78702 TTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTT 78761 || | |||||||| | ||||| || |||| || |||||||| | ||| || || Sbjct 2963 CTGGAAGATACCCTTGCTGGCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTT 2904 Query 78762 GGCGAGTTC---GCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTT 78818 ||| | || | ||| ||| || | || | || | | ||| || || ||| Sbjct 2903 GGCAATCTCCATGGATGTCTC---CATCGAAGCATAATAGATGGTCTCAAAAATATTCTT 2847 Query 78819 GTTGAGCTCGCGCGCCTTGGTCTC-GTCGAACGAAAGGCCGAGCATCATGAAGACATCGG 78877 ||| || || || ||| || || | ||||||| | | | | ||||| |||||| Sbjct 2846 GTTCAGTTCACGAGCC-TGCTCGCTTTCGAACGCATAGTTCATGAGAATGAAAGCATCGG 2788 Query 78878 CCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCT 78937 |||| ||||| || || || | | || ||||||||||||||| |||||| ||| | Sbjct 2787 CCAGACCCTGAACACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTG 2728 Query 78938 CGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCA 78997 | |||||| |||| || || || ||| |||||||| ||||| ||| |||| Sbjct 2727 CAACCGGGTAGTAGTTGACGTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTCA 2668 Query 78998 CCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAAAGTCGGT--AGGCACAG 79055 | || |||| || | | || || | | | | || | ||| || |||| Sbjct 2667 CATCATACAGCTTCTTGTAGTCGAAGACACCGTCCTCCACAAACTTAGGTAAAGCCACA- 2609 Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115 || |||| ||||||||||||| ||| ||||| | | ||| || | || ||| Sbjct 2608 -GACGCCAAGTTGCACACGGCCACCTCATCCGGCGACGTATACTCCATTACCTCACAGCA 2550 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 ||| ||| || ||| ||||| | |||| ||||||| ||| ||| ||||| Sbjct 2549 CAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTC 2490 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||| || ||| | ||| || ||||||| ||| Sbjct 2489 CTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTG 2454 Score = 122 bits (134), Expect = 1e-22 Identities = 269/399 (67%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || ||||| |||||| || ||||| || | | |||||| ||||||||||||| || Sbjct 2221 CCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTAT 2162 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 || || || || || ||||| ||||| || || |||| ||||| |||||||||| ||| Sbjct 2161 ATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTA 2102 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGT--CCCGTTGATTCGTG 79621 || || || | |||||| | ||| |||| | | || || || | || || || Sbjct 2101 AACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTG 2042 Query 79622 TACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATG 79680 | | || || ||||| | ||| || || || || || | ||| ||||| ||| Sbjct 2041 T--TAGTGGCTCGTATGTT-GTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATG 1985 Query 79681 TGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACC 79740 ||| || | ||| | || || || || || || ||||| || |||| |||||| | Sbjct 1984 CACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGT 1925 Query 79741 AGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 | || || |||| || ||| || || || || || | || |||||||| Sbjct 1924 AAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCA 1865 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 || || || ||||| || ||||| |||||||||||| Sbjct 1864 TGAGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCC 1826 >seq963 Length=117303 Score = 176 bits (194), Expect = 5e-39 Identities = 552/841 (66%), Gaps = 13/841 (2%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | ||| |||||| | | ||| ||| | ||| | | || | Sbjct 40855 TGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGACTTGGTGCATGATC 40914 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||||||||| | | || | || | || | ||||| || ||| || || |||| Sbjct 40915 TCAAGGATTGGAAAACACTTACGGACAATGAACGTCATTTTATTAAGCATGTGCTTGCCT 40974 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 | || || || |||||||| ||||||| || ||| | | |||||||||| ||| || | Sbjct 40975 TTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGAACTTTAGCAATGAAG 41034 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 | || | | || || || | || |||| | ||| | | | | |||| ||| ||| Sbjct 41035 TGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAAATTGCT-ATCGAGAATATTCAC 41093 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT 59891 || ||| || || || | || |||| | | ||| || | | |||||| | | | Sbjct 41094 TCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGCTGTAGAGAAAGATCAT 41153 Query 59892 CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951 || | ||||| || || ||| ||| || || | ||||| | ||||| | || Sbjct 41154 CTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGCCAATTGGGCACTCAAG 41213 Query 59952 TGGA-TGAGTCCTG-GAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 ||| ||| || | | | |||| | || ||||||| | || ||||| | || ||| Sbjct 41214 TGGTGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGCGTTTGCTTCGGTAGAA 41273 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 || || |||||||||||||| ||||| |||| || |||||||| || ||||| || ||| Sbjct 41274 GGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAAGAAACGTGGTCTGATG 41333 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128 || || || || ||||| |||||||| ||| || || || || | || ||| ||| Sbjct 41334 CCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGGTATGCACACGGACTTT 41393 Query 60129 GCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATATTCACAAGAT 60187 || || | | | || || | || | | |||| || | | | | ||| |||| Sbjct 41394 GC-TTGTCTCATGTACTCGAAACTGGTTAACAAATTGCCAGCGAGTCGTGTGCACGAGAT 41452 Query 60188 TGTTCAGTGGGCTTGTGA-AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAAC 60246 | ||| ||| ||||| | | ||| |||||| | || |||| || | | | Sbjct 41453 TATTC-GTGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTCGAGC 41511 Query 60247 TCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCA 60306 |||| || ||| || | | | ||| ||||||||| |||| || || ||||| || Sbjct 41512 TCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTCTGC 41571 Query 60307 TGGCCCAGTTTGGAGAAGGACCA--ATTTACGGCGTGAATAACCCTTTCGACTGGATGGA 60364 | | | || | | ||| ||||| | || || || |||||||||||||| Sbjct 41572 TATACTCACTGGGTGTTG--CCAAGATTTATCATGCCAAGAATCCATTCGACTGGATGGA 41629 Query 60365 GACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAA 60424 | |||||| | |||| ||||||||||| || ||||| || || || || ||||| || Sbjct 41630 TATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCGAGTATTCCAA 41689 Query 60425 G 60425 | Sbjct 41690 G 41690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548496955509840