Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3725 156 5e-33 seq642 113 5e-20 seq1316 105 7e-18 >seq3725 Length=16789 Score = 156 bits (172), Expect = 5e-33 Identities = 350/518 (68%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 |||||||| || || ||||||||| || | | || ||| | | ||||||||||| Sbjct 1779 ATGCGCGTTGCTTTAGGTATCCACAAGAACAATATTCAAGCGGCTTTG-GAGACGTACGA 1837 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 || ||| || |||| ||||| || || |||||||| |||| || ||||| || Sbjct 1838 GTTGATGTCTCAGAAGTTTTTTACTCATGCGACGCCAACGTTGTTTAATGCTGGAACTCC 1897 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 || ||| || |||| || || | | || ||| ||||||| ||||| || || || Sbjct 1898 TCGCCCCCAACTGTCCTCGTGTTTTTTACTAGCTATGCAGGATGATTCGATTGAAGGTAT 1957 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 || || || | ||| | ||||| ||| ||||| ||| | ||||| || || || Sbjct 1958 TTATGACACATTGAAGCAATGTGCGTGCATTTCCAAATGGGCTGGTGGGATTGGCATTAG 2017 Query 53434 C-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 ||| | ||| | || || | || || || || || || | | | | Sbjct 2018 TATGCAC-AACATACGAGCCACTAACAGCTATATTCGTGGCACTAATGGTTCCTCTAACG 2076 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||| | || ||| | || || || ||| |||||||||| ||||| |||| ||||| | Sbjct 2077 GGATCATTCCCATGTTACGGGTGTTTAACGACACGGCCCGATACGTGGACCAAGGTGGAG 2136 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 | || ||||| || || || || || ||| | ||||||||||| |||||| | | |||| Sbjct 2137 GCAAACGCAAAGGATCCTTTGCTATATACTTGGAGCCGTGGCATGCCGACGTGTTTGAGT 2196 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 |||| || |||||| || || ||| | ||| | || |||||| | || ||| Sbjct 2197 TTCTAGACCTGCGTAAAAACCACGGTAATGAATTGCACCGAGCGCGTGACTTATTCTAC- 2255 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 ||||| |||||||| || || || ||| || |||||| Sbjct 2256 GCTCTATGGATTCCTGATCTGTTTATGAAACGGGTGGA 2293 Score = 122 bits (134), Expect = 1e-22 Identities = 300/451 (67%), Gaps = 13/451 (3%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| |||| ||||| || ||||| || || ||||| ||||||||| | Sbjct 3039 GGCATCCGCAACTCTTTGCTAGTGGCTCCTATGCCTACTGCTTCGACTGCTCAGATCCTT 3098 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || ||||||||| | |||||||||||||| | ||||| ||| || || || || Sbjct 3099 GGTAACAACGAGTCCATCGAGCCGTACACGTCGAACATGTACAACCGACGTGTGCTTGCT 3158 Query 55598 GGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 ||||||| ||| |||| |||||| |||| | || || ||| | | | | Sbjct 3159 GGTGAGT---TCACGATCGTGAACAAGTACCTGATGAAAGAGCTGATCGATCTGGATATC 3215 Query 55655 TGGAACCCGCAGATC--AAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG 55712 |||| || || || | | |||| || || || | || || || || || || Sbjct 3216 TGGACGCCCGAGGTCCGTAACCAGATACTGAACG--ACCGTGGTTCTGTGCAAAAGGTGA 3273 Query 55713 AG---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGA 55769 || ||||| | | |||| |||| ||| || |||||||| || ||||| Sbjct 3274 AGACCATTCCGGACCATGTCAAAGAGAAGTACAAAACAGTGTGGGAAATCAAGCAGAAAT 3333 Query 55770 GTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACA 55829 || | || || ||||| |||||||| ||||| |||| ||||| || |||| Sbjct 3334 CGGTGTTAGATCTGTCGGCTGACCGTGGTGCTTACATTTGCCAGAGTCAGTCGCTTAACA 3393 Query 55830 TCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889 | ||| | | || | | || | | ||| ||||||||||||| ||||| | Sbjct 3394 TTCACATCGCCGACCCGACGATCAGTAAACTCACCTCCATGCACTTTTACGCTTGGAAAA 3453 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCG 55920 |||| || |||||||||||||| || |||| Sbjct 3454 AGGGGCTTAAGACGGGTATGTATTACATGCG 3484 >seq642 Length=28218 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || ||||||||||||||||||||||| | ||||| |||||||| Sbjct 15479 GTGAAAATATAACGAGAGCTGGCCGCATCCTTGCCACCCATTAAACGCGTACCAAACTGA 15538 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| || |||| | ||||||| || ||||||| ||| |||| |||||| Sbjct 15539 CCGATGGGCGACAGAAGGTGAATGTTGTTGCTTCCGACGAAATCCTGTGCCATATTCACG 15598 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || |||||||| ||| ||| ||||| || ||||| | || || | | ||| || Sbjct 15599 ATACAGCCCTGCAAACTTTGTTCGCCGTGATGGTACGCAGAGTGTTCTGACACGTAGCCA 15658 Query 152209 GCCAACTGCGCCACCTTCATGTCCG 152233 |||| || || ||||| | |||| Sbjct 15659 GCCAGTTGTGCGACCTTGAGCTCCG 15683 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||||||| || |||||||||||||| | ||||||||| || || Sbjct 15479 GTGAAAATATAACGAGAGCTGGCCGCATCCTTGCCACCCATTAAACGCGTACCAAACTGA 15538 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||| || |||| | ||||||| || || || | || |||| || || Sbjct 15539 CCGATGGGCGACAGAAGGTGAATGTTGTTGCTTCCGACGAAATCCTGTGCCATATTCACG 15598 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || | || || || || || ||||| | || || | ||||||||| Sbjct 15599 ATACAGCCCTGCAAACTTTGTTCGCCGTGATGGTACGCAGAGTGTTCTGACACGTAGCCA 15658 Query 117485 GCCAGCTGAGCCACCTT 117501 ||||| || || ||||| Sbjct 15659 GCCAGTTGTGCGACCTT 15675 >seq1316 Length=31230 Score = 105 bits (116), Expect = 7e-18 Identities = 174/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||| ||||| | || || ||||||||||| ||| || ||| |||||||| || Sbjct 20652 GTAAAGATATATCGAGGACTAGCGGCATCCTTGCCTCCTTGCAACCGAGTTCCAAATTGG 20593 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || || | || || |||||||| | || || || ||||| |||| || ||| Sbjct 20592 CCGGATGGATACAGCAGTGGAAGGTTGTTAGAACCAACAAAGTTCTGGGCCATGTTAACA 20533 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || || | |||||||| || ||||| || || ||||| | ||| ||| Sbjct 20532 ATTGTAGAATGTAATGAAGCTTCACCATGATGATAAGCTGTGTGCTCACTGCAGTAACCC 20473 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 |||| ||||| ||||| | || | ||||| || ||| | |||||| | | |||| Sbjct 20472 GCCAGTTGCGCGACCTTTACCTCGCTAGTCAGCTTGCGCTTCATGCAGGCGAACAGCACC 20413 Query 152269 TTGCGCTGGGA 152279 || ||||| || Sbjct 20412 TTACGCTGCGA 20402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 272/411 (66%), Gaps = 20/411 (5%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || ||||||||||||||||||| || | |||||| | | ||||||||| | Sbjct 20805 CCTGTACCAATACCCTCTGCACCATTCACGAGCAGCATCGGAATAATAGGAACGTAATAT 20746 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CTC- 117268 | || || || | | ||| || || | |||| |||| |||| ||| ||| Sbjct 20745 ACGGGTTCAACTGGAAAACCATCATCGTCGGCGTAACGAAGCAAAGCATCGTCTTCCTCA 20686 Query 117269 GGATCGAATATGTTCTTGGTCCACGGTGCT-----AGGCGAGTGAAAATGTAACGAGAGC 117323 ||| |||| | | | | ||||| || | || || || || |||| | Sbjct 20685 GGA---AATAC---CAAG--CGAGTGTGCTTTTGAAGCTGTGTAAAGATATATCGAGGAC 20634 Query 117324 TTGCAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGG 117382 | || ||||||||||| || |||| || || || ||||| || || | || || Sbjct 20633 TAGCGGCATCCTTGCCTCCTTGCAA-CCGAGTTCCAAATTGGCCGGATGGATACAGCAGT 20575 Query 117383 TTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTC 117442 |||||||| | || |||||||| || |||| ||| ||||| ||| || | Sbjct 20574 GGAAGGTTGTTAGAACCAACAAAGTTCTGGGCCATGTTAACAATTGTAGAATGTAATGAA 20515 Query 117443 GCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 || |||||||| ||||| || || ||||| | || ||| |||||||| || || ||||| Sbjct 20514 GCTTCACCATGATGATAAGCTGTGTGCTCACTGCA-GTAACCCGCCAGTTGCGCGACCTT 20456 Query 117502 CATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTG 117552 | || ||||| || ||| | |||||| | | |||||| ||||| Sbjct 20455 TACCTCGCTAGTCAGCTTGCGCTTCATGCAGGCGAACAGCACCTTACGCTG 20405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547188221947800