Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3454 95.1 8e-15 >seq3454 Length=44902 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || || |||||| || || || || || || || || || Sbjct 34 AGGCGGAGCACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGACAGCGTACGA 93 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || || ||||| || | |||||| ||||| ||||| | || ||| Sbjct 94 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCC 153 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTT-CGCTCTCCACTTCCACGG 34666 |||||| |||||||| || | || | ||| | || || | ||||| |||| | Sbjct 154 TTGTCTTGAATCTTTTGCTTCA-CGTTGTCAATCGAATCAGACGAT-TCCACCTCCAGCG 211 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 | ||||| || || || | || || |||||||||||||| |||| || Sbjct 212 TGATCGTCTTGCCCGTCAGTGTCTTGACAAAAATCTGCATCTTGAGTG 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714022950213