Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3454 172 1e-37 seq977 136 9e-27 seq832 84.2 5e-11 >seq3454 Length=44902 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || ||||| || || |||| || || | || ||| Sbjct 40 AGCACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGACAGCGTACGACCGTCT 99 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || |||||||| || | ||||||||||| Sbjct 100 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 159 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| |||||||| || || | ||||| ||| ||||| || ||||||||| Sbjct 160 TGAATCTTTTGCTTCACGTTGTCAATCGAATCAGACGATTCCACCTCCAGCGTGATCGTC 219 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| ||||| | |||||| || Sbjct 220 TTGCCCGTCAGTGTCTTGACAAAAATCTGCATCTT 254 >seq977 Length=24603 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || || || || |||| ||| || | |||||||||||||||||||| || ||||| Sbjct 11102 TTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATC 11043 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || ||||| |||||||| |||| ||||||||||||||||| || || || || || || Sbjct 11042 AGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10983 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| ||| || || || || | ||| || ||||| || || | |||||| ||||| Sbjct 10982 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCACAAAG 10923 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 10922 ATCTGCAT 10915 >seq832 Length=21457 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||| || | ||| | || ||||| ||||| ||||| || ||||| | || Sbjct 3805 ACGAAGACGTAGCACCAAGTGCAAGGTTGACTCCTTTTGAATGTTGTAGTCCGCTAACGT 3864 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || || ||||| || ||||| ||||| || || | ||| Sbjct 3865 ACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGGATTCC 3924 Query 211013 T 211013 | Sbjct 3925 T 3925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159091687510265