Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq373 161 2e-34 seq3454 149 1e-30 seq977 132 1e-25 seq1630 114 3e-20 seq2455 84.2 5e-11 >seq373 Length=6408 Score = 161 bits (178), Expect = 2e-34 Identities = 207/288 (72%), Gaps = 11/288 (4%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| |||||||||| ||||| | | |||| ||| | Sbjct 77 AACTTTATATTTAATTTTTAGTGCTTTTGCTGGTATTATCGGTACAACACTTTCGATGTT 136 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||| | || ||| |||||| || | || ||| ||| | || Sbjct 137 AATTAGAATTGAATTATCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATA 196 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| | |||| || || || ||| ||||| |||| ||||| |||||||| | | | Sbjct 197 TAATGTTGTAGTTACTGCTCACGCTTTTATTATGGTTTTTTTTTTAGTTATGCCTGCTTT 256 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || || || |||||||||||||| ||||||||||||||||| Sbjct 257 AATTGG-----------NNTGGTTTGTACCTTTAATGATTGGAGCTCCTGATATGGCTTT 305 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 306 TCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 353 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| || ||||| || |||||||||||||| | | ||||| || || ||||| Sbjct 750 TTCAGGATGGCCGAAAAACCAAAATAAATGTTGATATAATACGGGATCACCACCACCTGA 691 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||| ||| |||| |||||| ||||||| ||||||||| |||| Sbjct 690 TGGGTCATAAAACGAAGTATTTAAATTTCGATCAGTTAATAACA 647 >seq3454 Length=44902 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| |||||| || | || || | || ||| Sbjct 40 AGCACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGACAGCGTACGACCGTCT 99 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| ||||| || |||||||||||| Sbjct 100 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 159 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||||||||||| || || | || || | |||||| || | |||||||||| Sbjct 160 TGAATCTTTTGCTTCACGTTGTCAATCGAATCAGACGATTCCACCTCCAGCGTGATCGTC 219 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 220 TTGCCCGTCA 229 >seq977 Length=24603 Score = 132 bits (146), Expect = 1e-25 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| || ||||| ||||| || |||||||||||| Sbjct 11072 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCTTCC 11013 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| ||| || | |||||||| || || Sbjct 11012 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCAGTCGGACGGCTCCACGTCCAAAGTA 10953 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||| |||||||| || Sbjct 10952 ATGGTCTTGCCTGTCAAAGTCTT 10930 >seq1630 Length=32053 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 11967 AGCCTATTATCTTTAGCTGATTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 11908 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| || | ||||| ||||||||| |||| || ||||||| |||||||||||||| | Sbjct 11907 CCAAACTTTTTTAAAGG-CAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 11849 Query 6865 GTAAT 6869 | ||| Sbjct 11848 GCAAT 11844 Score = 109 bits (120), Expect = 1e-18 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 11280 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 11339 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| || || | ||||| ||| | || Sbjct 11340 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATCATACTTTTCAGGCGGAGTGCTT 11399 Query 7850 TACGCGTTAGCTTAATTA-ATATAAAAA 7876 ||||||||||| |||| || |||||| Sbjct 11400 AACGCGTTAGCT--ATTATATCTAAAAA 11425 Score = 105 bits (116), Expect = 2e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||||||||| || || ||||| || || ||||| |||||||| ||||| Sbjct 7404 AAAATTTGTCCATCAGTAATTGAAATTACATTAGTTGGTATATATGCAGAAACGTCACCA 7345 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || ||||| ||||||| || |||||||||| ||| |||| Sbjct 7344 GCTTGGGTTTCAATAATCGGTAAAGCTGTTAAAGAACCACCACCAATTTTTCTATT 7289 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 15174 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 15115 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 15114 GTAACATGATGTATAGGGTCTGACAC 15089 >seq2455 Length=6927 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/108 (78%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 7576 GCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGA 7635 || ||||| | | ||||| ||| || |||||||| | | | || || |||| || Sbjct 6646 GCTCATGCTTCTATTATGTTTTAAATTA--GTTATGCCTGCTTTAATTGGTAGTTTTGGT 6589 Query 7636 AATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 ||||| || ||||||||||||||||| ||||||||| ||||||||||| Sbjct 6588 AATTGGTTTGTTCCTTTAATGATTGGAGCTCCTGATTTGGCTTTTCCA 6541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192469150738334