Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq963 241 2e-58 seq3725 188 1e-42 >seq963 Length=117303 Score = 241 bits (266), Expect = 2e-58 Identities = 594/889 (67%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 46345 TATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 46404 || || || ||||||||||||||||| || || ||||||| | || || | ||||| Sbjct 41683 TACTCGCCCACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGCGAGATCATATCCATC 41624 Query 46405 AAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTA 46464 | || || ||||| | ||| |||||| || || || | | | | ||| | Sbjct 41623 CAGTCGAATGGATTCTTGGCATGATAAATCTTGGCAACACCCAGTGAGTATAGCAGACGG 41564 Query 46465 TCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACC 46524 || || ||||| || || ||| ||| | | | | ||||| || ||||| | ||| Sbjct 41563 TCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAGCTCGACA 41504 Query 46525 GGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGA-TATTATCGATG 46582 || || | || | |||||| || ||||| || |||||||| ||| || | ||| Sbjct 41503 GGGAGCGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCACGAATAATCTCGTGC 41444 Query 46583 TTACTGTTTCCT--CACTTGGTGGATGCATCAAATGTTTAA-ACATTAAACATGCAAAAT 46639 || | || || || || | | | | | | |||| | ||| ||||| | Sbjct 41443 ACACGACTCGCTGGCAATTTGTTAA-----CCAGTTTCGAGTACATGAGACAAGCAAAGT 41389 Query 46640 CACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTA 46699 | || | |||||||| | |||||||| ||||| || || | || |||||||| | Sbjct 41388 CCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCA 41329 Query 46700 GTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTA 46759 | ||||| || ||||||||||| |||| ||| || ||||| ||||| |||||||||| Sbjct 41328 GACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTA 41269 Query 46760 CAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC-TGGCATCATTATGAATCCACCT-TTG 46817 | | || || || | || | || |||| || || || | |||| ||| Sbjct 41268 CCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACA-CACGGGGGTCACACCACTTG 41210 Query 46818 AG--CCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 || |||||| || || ||||| ||||| || || || || |||||| | |||| Sbjct 41209 AGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGA 41150 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 | ||| || || || |||| ||||||||| || | || ||| | || || ||| Sbjct 41149 TCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGA 41090 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || ||||| || ||||| |||||||| || | ||||||| | || || || Sbjct 41089 ATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCA 41030 Query 46996 GTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 | | ||| ||||| | | |||||||||||| || |||||||| || |||||||| | Sbjct 41029 TTGCTAAA--GTTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGG 40972 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATAT 47113 | | ||||| |||||||||| ||||| | || ||| | ||||| || |||| || Sbjct 40971 CAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAGAT 40912 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 | | | || | ||||| ||||||||||| || ||||| ||||| || ||||| | Sbjct 40911 CATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTCTTGTACATTT 40852 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| | || | || || ||||||| ||||| | ||| || || Sbjct 40851 GCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAACGATTCGGGTT 40803 >seq3725 Length=16789 Score = 188 bits (208), Expect = 1e-42 Identities = 935/1471 (64%), Gaps = 31/1471 (2%) Strand=Plus/Minus Query 75779 GATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAA 75838 || || ||||| || | || |||||||| |||||||| |||||||| ||||| | ||| Sbjct 3112 GACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCACTAGCAAA 3053 Query 75839 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 75898 || | || || || | | | || || || | |||| ||||||||| | Sbjct 3052 GAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAGTCCCAAAGACCA 2993 Query 75899 GATG---GTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | | ||| |||| | ||| | || | || || ||||| || || || Sbjct 2992 GAGGACGGGGTGACACCCCACATGTCGAACTGGAAGATACCCTTGCTGGCCGGGGAGCCC 2933 Query 75956 TTATATGTTTCGTAAGTCCC--GTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCAC 76013 | | |||| ||||| | || || |||| || | || | ||| | || | Sbjct 2932 TGAAATGTCTCGTACGGGCCCAGTTCTTTG--GCAATCTCCATGGATGTCTCCATCGAAG 2875 Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073 | ||||| || || || ||||| ||||| || || || | || | || || || | Sbjct 2874 CATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACG 2815 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 ||| | | ||||| || ||||| || || |||||||| ||||| || | ||| | | Sbjct 2814 CATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGT 2755 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | | | ||||| || ||| |||| || ||||| || || | || |||| || | Sbjct 2754 GGCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGT 2695 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253 | || || | | || || || ||| || | || || | || || || | Sbjct 2694 TAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGT 2635 Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCAT 76313 | ||||||| || | ||| | ||| || | || || ||||| ||||||| | Sbjct 2634 CCTCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCG 2575 Query 76314 TGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373 | ||| | |||| ||| ||| | ||||| | ||| || |||||||| || | Sbjct 2574 ACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCT 2515 Query 76374 GGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCT 76433 ||||| ||| ||| || ||||||| | || | ||| || || || ||||||| Sbjct 2514 GGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCT 2455 Query 76434 GTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTATTATAGATTTGTATCGCTTC 76492 | | || | ||| ||| | | || || || ||| | || | ||| || Sbjct 2454 GCGCATCTAAAATGCTGAACCATA-GCTGCTGCGCATTAATTGTC--TTGCGAGCGCGTC 2398 Query 76493 TCTC--TTTCATATTGTGTATATAACCGT-TCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| |||| || | | ||| || ||| || || || |||||||| || | | | Sbjct 2397 CCTCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGA 2339 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCAT---CTTCCTTAACCCGTTTC 76606 ||||| ||| |||||||| | || ||||| |||| ||||| ||||||||| Sbjct 2338 GCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCC---ACCCGTTTC 2282 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 ||||| |||||||| ||||||||||| |||| || || | || | |||||| Sbjct 2281 ATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTA 2222 Query 76667 CCTGTATTCTTTTTA---AGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || | |||||| || ||||| ||||| | | || | |||||| || || | Sbjct 2221 CCG---TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAG 2165 Query 76724 TATATCGCCATAACACCCGGT-CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 ||||| || | | | || | ||||| || || || || | |||| ||| |||| Sbjct 2164 TATATAGCAA-AGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTC 2106 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 ||| | || | ||||| ||||| || |||||||| | |||||| || ||| |||||| Sbjct 2105 GTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATA 2046 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 || | || || || || ||| | ||| || || || ||| ||| || || Sbjct 2045 GCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAAT 1986 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 ||||| | |||||||||||||| || || || || ||||||| ||| || Sbjct 1985 GCACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAG 1926 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 | |||||| |||| ||| | || |||||| ||||||||||| || || | || Sbjct 1925 TAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGC 1866 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCA 77082 |||||| || | || | ||| | | | ||| || || | | | |||| |||| Sbjct 1865 ATGAGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTT 1806 Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT- 77141 | || || |||| ||| || ||||| | | || || ||||| || || | ||| | Sbjct 1805 CTTGTGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCAC-GACTTTTC 1747 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 ||| | || | ||| ||| || | ||||| || || ||||||| || || Sbjct 1746 CATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAA 1687 Query 77202 AGTCTCTTTCGTAAATAATAACCGAATTTAG 77232 |||| | |||| ||| || | || ||||| Sbjct 1686 AGTCCCGGTCGTGAATGATTGCAGAGTTTAG 1656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712898209667520