Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq963 154 2e-32 >seq963 Length=117303 Score = 154 bits (170), Expect = 2e-32 Identities = 375/561 (67%), Gaps = 14/561 (2%) Strand=Plus/Minus Query 23530 CCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTT 23589 |||||||| | |||||| | || || || || | | || ||||| | || ||||| Sbjct 41377 CCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCAGACCACGTTTC 41318 Query 23590 TTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAA 23648 || | |||||| || | |||| || || || || |||||||| || || || | ||||| Sbjct 41317 TTGAGCCAAAAGATAG-AGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTACCGAAGCAAA 41259 Query 23649 GGCCACAAGACGT-----GTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTC 23703 |||| |||||| |||| | || || ||| | ||| || || | Sbjct 41258 CGCCAATAGACGTTCCGCGTACGA--TGACACACGGGGGTCACA---CCACTTGAGTGCC 41204 Query 23704 CAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTT 23763 ||||| || ||| || ||||| || || ||||| || | |||| | ||| Sbjct 41203 CAATTGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGATCTTTC 41144 Query 23764 TCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTT 23823 ||| || || | |||||||||||||| || | ||| | || || |||||||| Sbjct 41143 TCTACAGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGAATATTC 41084 Query 23824 TCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAA 23883 || |||||||| ||||| || ||||| || | |||||||| | ||| || ||||| | Sbjct 41083 TCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTA 41024 Query 23884 AATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACA 23943 || | | || | ||| || || ||||| |||||||| || ||||| || ||||| ||| Sbjct 41023 AAGTTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACA 40964 Query 23944 TATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTAATATCTTTTGA 24002 | || |||||||| | ||||| || ||| | |||||||||| || | ||| | Sbjct 40963 TGCTTAATAAAATGACGTTCAT-TGTCCGTAAGTGTTTTCCAATCCTTGAGATCATGCAC 40905 Query 24003 TAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAAT 24062 || || | || || ||||||| || ||| ||| ||| |||||| |||| | Sbjct 40904 CAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTCTTGTACATTTGCCACAC 40845 Query 24063 ATCATTATGTTGTATTGGAAA 24083 || || | || || ||||| Sbjct 40844 GTCGTTCTCCTGAATAGGAAA 40824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521461527965400