Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10]
4,061 sequences; 25,220,599 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3454 123 6e-23
seq977 102 2e-16
>seq3454
Length=44902
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || || || || || |||||||| || ||||||||| || ||
Sbjct 248 CAGATTTTTGTCAAGACACTGACGGGCAAGACGATCACGCTGGAGGTGGAATCGTCTGAT 189
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || ||||| || ||||||||||| ||||| ||||| ||||| || ||||||||
Sbjct 188 TCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 129
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || ||||| ||||| || | || || | || || || ||
Sbjct 128 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGTCGTACGCTGTCGGACTACAATATC 69
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 68 CAGAAGGAGTCGACGCTACACCTGGT 43
>seq977
Length=24603
Score = 102 bits (112), Expect = 2e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| ||| | ||||| || || || || | || ||||| || |||
Sbjct 10918 CAGATCTTTGTGAAGACTTTGACAGGCAAGACCATTACTTTGGACGTGGAGCCGTCCGAC 10977
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||| || || ||||| || || || |||||||| ||||| || || || |||||||||
Sbjct 10978 TGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATTCCACCTGACCAGCAA 11037
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099
|| || ||||| || || || ||||| |||||||| | || ||| | || || ||
Sbjct 11038 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACACTTTCGGACTACAA 11093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203668567984834
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |