Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245715.1_202017-08-10] 4,061 sequences; 25,220,599 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3454 140 3e-28 seq977 104 2e-17 >seq3454 Length=44902 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || ||||| ||||||||| || || ||||| || Sbjct 25 CCACCACGCAGGCGGAGCACCAGGTGTAGCGTCGACTCCTTCTGGATATTGTAGTCCGAC 84 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||| || || ||||| ||||| ||||| | || Sbjct 85 AGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 144 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| || ||||||||| ||| | | | | || ||| ||||| Sbjct 145 ATGCCTTCCTTGTCTTGAATCTTTTGCTTC-ACGTTGTCAATCGAATCAGACGATTCCAC 203 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| ||| ||||| || |||||||| ||||| || ||||||||||| || Sbjct 204 CTCCAGCGTGATCGTCTTGCCCGTCAGTGTCTTGACAAAAATCTGCATCTT 254 >seq977 Length=24603 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||||||||| || ||||| || || || || | || || ||||||||||| || || | Sbjct 11104 CCTTCTGAATATTGTAGTCCGAAAGTGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGA 11045 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||| || || ||||| | |||| | ||||||||| |||||| ||||| || | Sbjct 11044 TCAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 10985 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | || |||| || |||||| |||| || || || || || |||| ||||| || Sbjct 10984 CAATGCA--GTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTCAC 10927 Query 41851 GAAAATCTGCATG 41863 || ||||||||| Sbjct 10926 AAAGATCTGCATG 10914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462280532293200