Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq925 123 5e-23 seq276 89.7 1e-12 >seq925 Length=32479 Score = 123 bits (136), Expect = 5e-23 Identities = 660/1037 (64%), Gaps = 33/1037 (3%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| || |||||||| |||| |||| ||| || Sbjct 12224 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGAATATACTGATTGGCTGTCTCGTCGAG 12165 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| |||||||||||||| ||||| |||||||| |||| |||||| ||||| Sbjct 12164 ATGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCAAAACGCATGGAAGGATG 12105 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || | || | || | | || || |||| |||||| || || Sbjct 12104 CTTCCACACCTGTCCACTCGTCGGCTCAACCTCACCAGTCAGCATCTTAATCAGCGTCGA 12045 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCA-- 319227 ||| || |||||||| || | ||| | || | || | | || | | || Sbjct 12044 TTTACCGGCACCGTTGGGTCCAAGTACAGCAATAC--GACTAGACAGAGCGCACGTCACC 11987 Query 319228 TTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 319286 | ||||| | | || || || ||||||| | | | ||| ||| || Sbjct 11986 GAGATGTTGTTGATCGACGGCTTGGGGGTTCCAGGATACTGGTA-CGAGCACTTCGTCAG 11928 Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC-- 319344 ||||||| |||| ||||| | | ||||| || ||||| |||||| Sbjct 11927 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGT 11868 Query 319345 ---TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTC 319401 | ||| | ||| || ||| || ||||||| | | || || || | Sbjct 11867 AAACTTCACATTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGC 11813 Query 319402 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 319461 | ||| || ||| ||||| |||||||| |||||||||| || | ||||| || Sbjct 11812 TCCACAAAACGGGAAAGATTGCCCTTGTAGATCTTCAGCTTGCGG---GTCTCGTAGTGA 11756 Query 319462 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 319521 ||||| ||||| || | ||| ||||| || |||||||| ||||| || | ||| Sbjct 11755 ATAATGTTTGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATAATCGACGTT 11696 Query 319522 ACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGG 319581 || | | || ||||||| | || |||| ||||| || | |||| Sbjct 11695 ACATTTGTCAGACCCGTCAGGTAGTTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGG 11636 Query 319582 TTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 319641 || |||||||| ||||| | || | | ||| ||| | ||||| ||||| || || | Sbjct 11635 TTCGTCGGCTCATCAAGCAACAAGATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCC 11576 Query 319642 AGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA-ATATC 319700 | |||||| ||||| || || |||||||| || || ||| ||| | Sbjct 11575 AATTTCATCTTCCAACCACCAGAAAGAGTACCAACGCCCTGAGCTTGCATGTCAGGGGTG 11516 Query 319701 AAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTTA 319759 ||| ||| |||| | ||||| ||| || | || | | |||| ||| | Sbjct 11515 AAACCCACACCG--GCAAGAGTGTCCTCGACCTCCTTGCG---CGGAGTGTT---CTTCA 11464 Query 319760 CTTGTTCAT-CATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGA 319818 | |||| || | | ||| ||||| | | | | | || || || | | || Sbjct 11463 GATCCTCATCCACTAG-AATAAAGTCCACCACGGACAGCTCAGCCTCAGAAGCCTGCAGG 11405 Query 319819 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAGCTGGCC 319877 | ||| ||||| | |||| |||| | | ||| | ||||| || || |||||||| Sbjct 11404 TTGTGCTCCACAAACACAGTCTTCAGCTCGT-CGCGGCTAGGGAAGCCCTCCAGCTGGCC 11346 Query 319878 GTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 319937 ||| ||| |||||||||| || || ||||| ||||| || |||||||||||||| Sbjct 11345 GTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCGTTAGGACCACACAGACCGTA 11286 Query 319938 GCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGC 319997 |||| || || || ||| | || | ||||||| ||||| | |||||||| || Sbjct 11285 ACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAACAGAATCATACCACCATAGGC 11226 Query 319998 CAGAGAAAATTCACAAT 320014 || || || || |||| Sbjct 11225 AAGCGAGAACTCGCAAT 11209 >seq276 Length=1170 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||||| ||||||||||||||| |||||||||| | ||||||| | |||||||||| Sbjct 75 AAACGCACACCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGG 16 Query 165762 GTTCGAGCCCCACG 165775 |||||||||||||| Sbjct 15 GTTCGAGCCCCACG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057764541365810