Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3976 228 1e-54 seq4330 172 7e-38 >seq3976 Length=80323 Score = 228 bits (252), Expect = 1e-54 Identities = 423/613 (69%), Gaps = 21/613 (3%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| | ||| || || || ||| | ||| || || | |||||||| ||||| || | Sbjct 36074 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 36133 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | | || || ||||| || ||||| || || |||||||| || || ||| || || ||| Sbjct 36134 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCA 36192 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-------AC- 24297 || |||||||| |||||||| | ||||| || | || | ||| | || || Sbjct 36193 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 36252 Query 24298 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357 ||| | | || |||||| | ||||||| ||| ||||| || ||||| || || | Sbjct 36253 CGGGGGTCACA-----CCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCG 36307 Query 24358 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 24417 | || |||||| | ||||| | ||| || | || |||| |||||||||||| | Sbjct 36308 TATCAATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAA 36367 Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 || ||| | ||||| ||||| || || || || |||||||| ||||| || || | Sbjct 36368 GCAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGC 36427 Query 24478 TAGCCTC-GGTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTA 24534 ||| || |||| | || ||||| | | ||| |||| || | ||| |||||||| | Sbjct 36428 GAGCTTCAGGTACT-TGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAA 36484 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 | || ||||||||||||||||| || | ||||| || ||||||| ||| | | Sbjct 36485 TGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCG 36544 Query 24595 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 24654 | ||| | |||||||| |||| ||| | | || | ||||| ||||||| || | Sbjct 36545 TAAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACG 36604 Query 24655 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 24714 | ||||| || || || ||||| | ||| | ||| | | ||||| ||||||| |||| Sbjct 36605 AAGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAA 36664 Query 24715 ATCTATTTGGATT 24727 | | ||| || || Sbjct 36665 AACGATTCGGGTT 36677 >seq4330 Length=10061 Score = 172 bits (190), Expect = 7e-38 Identities = 787/1237 (64%), Gaps = 22/1237 (2%) Strand=Plus/Minus Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 ||||| ||||| || || || ||||| || || || | || | | ||| || || | | Sbjct 2765 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2706 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 || || | |||||| || || || || | || ||||||||||| || | ||| | || Sbjct 2705 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2646 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 | | | || || || ||| |||| || || || || || | || |||| || || Sbjct 2645 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2586 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCT 53686 ||||| | | | || || |||||| | ||| || | || || || || Sbjct 2585 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2526 Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 |||||| | || || | ||| |||| || || ||||| ||||||| | | Sbjct 2525 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2466 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | ||| | |||| |||| ||| | ||||| | ||| || || | ||| || || Sbjct 2465 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2406 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || ||| ||| || |||||| | || || |||||| || || |||||||| Sbjct 2405 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2346 Query 53867 GATTCTATAATCGCTTT-CCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTC 53925 | |||| ||| ||| ||| | | || || ||| | || | | | | | Sbjct 2345 GCATCTAAAAT-GCTGAACCATAGCTGCTGCGCATTAATTGTC--TTGCGAGCGCGTCCC 2289 Query 53926 TC--TTTCGTATAGTGTATACAATCGT-TCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 || ||||||| | ||| || ||| || |||||||||||||| | || | | Sbjct 2288 TCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAGC 2230 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 |||| ||| | |||||| | || ||||| || | | | | ||| ||||||||||| Sbjct 2229 AGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAAA 2170 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 |||||||||||||| ||||| |||| || | | || || || || || Sbjct 2169 CAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCG-- 2112 Query 54103 ATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 | |||||| || || || ||| | | | || | ||||||||| ||||||||||| Sbjct 2111 -TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATAT 2053 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | | ||| |||||| ||| || || || | ||||| || |||| ||| | Sbjct 2052 AGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAAA 1993 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 || | ||||| ||||| || || || || | |||||| || || |||||||| Sbjct 1992 CACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTGTT 1933 Query 54280 ACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 | |||| || || || || | || ||||| || ||| ||| || || | || Sbjct 1932 AGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCACGC 1873 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| | || || || ||||| || || || || ||||||| ||| |||| ||| Sbjct 1872 ACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAA 1813 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 ||| |||| |||| | ||| |||||| |||||||| || || || | || || || Sbjct 1812 ACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGAGT 1753 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 ||| | || | ||| | | | ||||||||| | ||| | | |||| | || Sbjct 1752 AAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTCTTGTG 1693 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 || |||| || || ||||| | | || || |||| || |||| || | || Sbjct 1692 GATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGA----CTTTTCCAT 1637 Query 54580 TTTCA-GCAAG---TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | || | ||| || ||| || | ||||| || || ||||||| || ||||| Sbjct 1636 TAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAAGT 1577 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 | || |||| ||| || | ||||| || | ||| || Sbjct 1576 CCCGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTT 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593689041791760