Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3976 159 4e-34 >seq3976 Length=80323 Score = 159 bits (176), Expect = 4e-34 Identities = 378/562 (67%), Gaps = 8/562 (1%) Strand=Plus/Minus Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGAC 116692 ||| |||||| |||||||| || |||||||| ||||||||||| | ||| ||| | ||| Sbjct 36638 GACGTGTGGCAAATGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGAC 36579 Query 116693 CT-GTCCAAGGACACGAGCGACTGG-GAGCGCTTGAACGACAACGAGCGCCATTTCATCA 116750 | || || | | | || || ||| | | ||| | ||||| || || ||||| || | Sbjct 36578 TTGGTGCATGATCTCAAG-GATTGGAAAACACTT-ACGGACAATGAACGTCATTTTATTA 36521 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GA 116808 |||| ||||| |||||||| || ||||| || ||||| || || |||||||| | | || Sbjct 36520 AGCATGTGCTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGA 36461 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGC 116868 | ||| || | || ||||| || | || || || ||||| ||||| ||||| || || Sbjct 36460 AC-TTTAGC-AATGAAGTGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAAATTGC 36403 Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928 || ||||| | |||||||| | ||||| || || || || || | | | Sbjct 36402 TATCGAGAATATTCACTCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGC 36343 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | ||||| | | | || || || || ||||| || || ||||| |||| || Sbjct 36342 TGTAGAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGC 36283 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 | | ||||| || ||| | | | | | | | | | || || || || |||| Sbjct 36282 CAATTGGGCACTCAAGTGGTGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGC 36223 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 || || | || || ||| | ||||| || ||| ||| | | || ||||||||||| Sbjct 36222 GTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAA 36163 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 |||||| || || ||||| || || | ||| |||||||| || | || || || Sbjct 36162 GAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGG 36103 Query 117169 TCTGCATTGCGACTTTGCCTGT 117190 | |||| |||||||| ||| Sbjct 36102 TATGCACACGGACTTTGCTTGT 36081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515190946667120