Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3976 172 5e-38 >seq3976 Length=80323 Score = 172 bits (190), Expect = 5e-38 Identities = 390/584 (67%), Gaps = 2/584 (0%) Strand=Plus/Plus Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | ||||||||| || |||| ||||| || | ||| |||| |||||| || | Sbjct 36074 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 36133 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | ||||||| ||||| || || ||||| || | |||||| |||| | || || |||| Sbjct 36134 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAG 36193 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttt 16406 | ||||| || ||||| || | ||||| || | | || || |||||| | Sbjct 36194 AGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACAC 36253 Query 16407 tactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTA 16466 || ||| || |||||||| ||||| | || ||||| || | || | Sbjct 36254 GGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAA 36313 Query 16467 TTGCATTAAATAAATAAtttttttCTTT-GCTATCTAAAATATAAGTATCTATTAGTAAA 16525 | ||| | | || || ||| ||| || ||| || |||| ||||| || || | Sbjct 36314 TAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAA-TATATGTATCAATAAGCAGT 36372 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||| | || || ||||||||||| || || || |||||||| |||||||| | |||| Sbjct 36373 GAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCT 36432 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | || ||| |||||| | ||| | || | || || || || || ||||| Sbjct 36433 TCAGGTACTTGCACTTCATTGCTAAAGTTCATGGCGAGATTCTCATTCACAATGCCATCA 36492 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 || ||||||||||| ||||| | || |||||||||| ||| || || | |||| || Sbjct 36493 CTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGTGTT 36552 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 ||| || | ||| | || |||| |||||| | ||||| || ||||| | Sbjct 36553 TTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCG 36612 Query 16766 GCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 || || || ||||||| ||| | ||| | | ||||||||| Sbjct 36613 GCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAA 36656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462486636998200