Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4330 152 5e-32 seq3976 136 4e-27 seq1055 131 1e-25 >seq4330 Length=10061 Score = 152 bits (168), Expect = 5e-32 Identities = 710/1113 (64%), Gaps = 29/1113 (3%) Strand=Plus/Minus Query 22466 AACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 ||||| || | |||| || || || | ||| ||||| || ||| |||| |||| || || Sbjct 3059 AACTCACCAG-CAAGCACACGTCGGTTGTACATGTTCGACGTGTACGGCTCGATGGACTC 3001 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 ||||| || || |||||||| |||||||| || ||||| || |||| || | ||||| Sbjct 3000 GTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCACTAGCAAAGAGTT 2941 Query 22585 TCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC---GGA 22641 | | ||||||||| | || ||| | | ||||||||| ||| | ||| Sbjct 2940 GCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGAGGA 2881 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||| || ||| ||||||| ||| | || || | || || |||||| ||| | Sbjct 2880 CGGGGTGACAC---CCCACATGTCGAACTGGAAGATACCCTTGCTGGCCGGGGAGCCCTG 2824 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 | || |||||||| || | ||||| || | | ||||| || | || Sbjct 2823 AAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGGATGTCTCCATCGAAGCATA 2764 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCG-GCGGCGGCGACGCTTTCGTACGGCA 22820 ||| || ||||| || || |||||||||| ||| | | | || |||||||| ||| || Sbjct 2763 ATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCT-CGCTTTCGAACG-CA 2706 Query 22821 TACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || ||| | | ||| || || |||| ||||||||| || || || | || |||| Sbjct 2705 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2646 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 || || ||| | ||||| | | || || | || || || |||| Sbjct 2645 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2586 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999 | ||| | ||| || | ||||| | | ||||| | || || Sbjct 2585 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2526 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | | |||||||| | || | || || | ||||| ||||||||||| || Sbjct 2525 T---CCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGC 2469 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 ||||| ||||| | | || || | || || | |||||||| | ||| | Sbjct 2468 GACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGC 2409 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||| || || ||| | ||||| ||||||| | ||| ||||||||| | | Sbjct 2408 TGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATC 2349 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGT--CTGAGCGTGAACACGTC--GCACGTACCT 23235 |||| || | || ||| | ||||| ||| || | || ||| || | | | Sbjct 2348 TGCGCATCTAAAAT-GCTGAAC-CATAGCTGCTGCGCATTAATT-GTCTTGCGAGCGCGT 2292 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 ||| ||| |||||||||| || | || || || ||| | || | || ||| || Sbjct 2291 CCCTCCTTT-TCGTACTTTTCATAAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAG 2233 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGCGTCT 23352 | || | || ||||||| | | ||||||| | | |||| ||| || ||| | Sbjct 2232 AGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTT---GCCATTAGCTTCCACCCGTTT 2176 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| ||||| || ||||||||||||||||| | || || || || | || || Sbjct 2175 CATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATT 2116 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||| ||| || || || | ||| || |||||||| |||||||||||||| | ||| Sbjct 2115 ACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTA 2056 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||||| | || | || || || || || ||||| |||||||||| ||| Sbjct 2055 TATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTT 1996 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 |||| | || ||| || | || ||||| || Sbjct 1995 AAACACCCGTAACATGGGAATGATCCCGTTAGA 1963 >seq3976 Length=80323 Score = 136 bits (150), Expect = 4e-27 Identities = 538/834 (65%), Gaps = 12/834 (1%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||| | ||| | |||||||| || || || || ||||| ||||| | |||||| | ||| Sbjct 36638 GACGTGTGGCAAATGTACAAGAAAGCCGAGGCTTCGTTCTGGACAGCCGAAGAGCTCGAC 36579 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | ||||| | |||||| | | || | || ||| | |||||||||| Sbjct 36578 TTGGTGCATGATCTCAAGGATTGGAAAACACTTACGGACAATGAACGTCATTTTATTAAG 36519 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | || ||||| || || ||||| ||||| || |||||| | | | | | Sbjct 36518 CATGTGCTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGA-A 36460 Query 57747 TTTTCACAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| ||| ||||||||||| | || || | ||||||||||| |||||| | || || Sbjct 36459 CTTTAGCAATGAAGTGCAAGTACCTGAAGCTCGCTGCTTTTACGGTTTTCAAATTGCTAT 36400 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || || | || || || | ||||| || || || ||||| || | ||| | | Sbjct 36399 CGAGAATATTCACTCGGAGGTCTATTCACTGCTTATTGATACATATATTAAGAATGCTGT 36340 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 |||||| | || | || || || || || || || ||||| || | Sbjct 36339 AGAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGCCAA 36280 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA-CGTTCGCCGAGAGGCTAATCGCGT 57984 ||| || |||| ||| | | | | | || ||| ||| || | ||| | |||| Sbjct 36279 TTGGGCACTCAAGTGG-TGTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGCGT 36221 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAG 58043 | || | || ||||| || ||||| || ||| ||| ||| | || |||||| | ||| Sbjct 36220 TTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGC-TCTATCTTTTGGCTCAAG 36162 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 ||||| || |||||||| || || | || |||||| | || || || || ||| Sbjct 36161 AAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGGT 36102 Query 58104 CTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGAC-GCGGGA 58162 | || || || ||||| || || |||||||| | | || || ||| | | ||| | Sbjct 36101 ATGCACACGGACTTTGCTTGTCTCATGTACTCGAAACTGGTTAACAAATTGCCAGCGAG- 36043 Query 58163 TCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGC 58222 ||| | || ||||| || || || | || || | |||||||| || | Sbjct 36042 TCGTGTGCACGAGATTATTCGTGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTC 35983 Query 58223 CCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGT 58282 || || || | | | || |||||| | | |||| ||||||||||||| || Sbjct 35982 GCTTCCTGTCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGT 35923 Query 58283 TGCCGACAGACT--TTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCG 58340 || ||| | || | | ||| |||| || | ||| | | || ||||| Sbjct 35922 GGCTGACCGTCTGCTATACTC--ACTGGGTGTTGCCAAGATTTATCATGCCAAGAATCCA 35865 Query 58341 TTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAAA 58394 || || | ||| || |||||||||| | |||||||| ||||||||||| ||| Sbjct 35864 TTCGACTGGATGGATATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAA 35811 >seq1055 Length=24595 Score = 131 bits (144), Expect = 1e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || ||||||||| |||||||||| || || || | ||||| || || Sbjct 13690 AATCATGCAGATCTTTGTAAAGACTTTGACAGGCAAGACCATTACTTTGGACGTGGAGCC 13631 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| | | || | ||||| |||| ||| |||||||||||| | || || || Sbjct 13630 GTCCGACTGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGTATTCCACCTGA 13571 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||||| || || |||||||| ||| |||||||| Sbjct 13570 CCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGAC 13531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445741955285040