Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3976 210 3e-49 seq4330 179 5e-40 >seq3976 Length=80323 Score = 210 bits (232), Expect = 3e-49 Identities = 417/612 (68%), Gaps = 19/612 (3%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| | ||| || || || ||||| ||| || || | |||||||| ||||| || | Sbjct 36074 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 36133 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | | || || ||||| || ||||| || || |||||||| || || ||| || || | Sbjct 36134 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAG 36193 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-------AC-C 33745 | ||||| || |||||||| | |||||| || | || | || | || || | Sbjct 36194 AGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACAC 36253 Query 33746 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33805 || | | || |||||| | ||||||| ||| ||||| || ||||| || ||||| Sbjct 36254 GGGGGTCACA-----CCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGT 36308 Query 33806 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 33865 || || ||| | ||||| | ||| || | || |||| ||| ||||| || | Sbjct 36309 ATCAATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAG 36368 Query 33866 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 33925 || ||| | ||||| ||||| || || || || || ||||| ||||| || || | Sbjct 36369 CAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCG 36428 Query 33926 AGCCTC-GGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTAT 33982 ||| || |||| | |||||||| | | ||| |||| || | ||| |||||||| || Sbjct 36429 AGCTTCAGGTACT-TGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAAT 36485 Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 34042 |||||||||||||||||||| || | ||||| || ||||||| ||| | || Sbjct 36486 GCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGT 36545 Query 34043 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 ||| | |||||||| |||| ||| | | || | ||||| ||||||| || || Sbjct 36546 AAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGA 36605 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||||| || || || ||||| | ||| | ||| | | || || || |||| ||||| Sbjct 36606 AGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAA 36665 Query 34163 TCTATTTGGATT 34174 | ||| || || Sbjct 36666 ACGATTCGGGTT 36677 >seq4330 Length=10061 Score = 179 bits (198), Expect = 5e-40 Identities = 787/1234 (64%), Gaps = 16/1234 (1%) Strand=Plus/Minus Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 ||||| ||||| ||||| || ||||| || || || | || | | ||| || || | | Sbjct 2765 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2706 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 || || | |||||| || || || || | || ||||||||||| || | ||| | || Sbjct 2705 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2646 Query 62805 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62864 | | | || || || ||| |||| || || || || || | || |||| || || Sbjct 2645 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2586 Query 62865 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62924 || || | | | || || |||||| | ||| || | || || || || Sbjct 2585 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2526 Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 |||||| | || || ||||| |||| || |||||||| ||||||| | | Sbjct 2525 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2466 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | ||| | |||| |||| ||| | ||||| | ||| || || | ||| || || Sbjct 2465 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2406 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || ||| ||| || |||||| | || || ||||| || || |||||||| Sbjct 2405 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2346 Query 63105 GATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63162 | |||| ||| ||| ||| | | || | || || ||| | || | | | | Sbjct 2345 GCATCTAAAAT-GCTGAACCATAGCTGCT-GCGCATTAATTGTC--TTGCGAGCGCGTCC 2290 Query 63163 CTC--TTTCGTATAGAGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 ||| ||||||| ||| || ||| ||||||||||||||||| | || | Sbjct 2289 CTCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAG 2231 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 |||| ||| | |||||| | || ||||| || | | | | ||| |||||||||| Sbjct 2230 CAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAA 2171 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 | |||||||||||||| ||||| |||| || | | || || || || || Sbjct 2170 ACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCG- 2112 Query 63340 TATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| || || || ||| | | | || | ||||||||| |||||||||| Sbjct 2111 --TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATA 2054 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || | ||| |||||| ||| || || || | ||||| || |||| ||| Sbjct 2053 TAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAA 1994 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | || | ||||| ||||| || ||||| || |||||| || || ||||||| Sbjct 1993 ACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTGT 1934 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 | |||| || || || || | || || || || ||| ||| || || | | Sbjct 1933 TAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCACG 1874 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | ||| | || || |||||||| || ||||| || |||||| ||| |||| || Sbjct 1873 CACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAA 1814 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| |||| |||| | |||| |||||| |||||||| || || || | || || | Sbjct 1813 AACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGAG 1754 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | || | ||| | | | ||||||||| | ||| | | |||| | | Sbjct 1753 TAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTCTTGT 1694 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 | || |||| || || ||||| | | || || |||| || || | ||| || | Sbjct 1693 GGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGACTTTTCCATTAA 1634 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 || | || ||| || | ||||| || || ||||||| || |||||| | Sbjct 1633 CACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAAGTCCC 1574 Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 | |||| ||| || | || || |||| ||| || Sbjct 1573 GGTCGTGAATGATTGCAGAGTTTAGCTCATCTTT 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629783062377360