Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4330 203 4e-47 seq3976 196 6e-45 >seq4330 Length=10061 Score = 203 bits (224), Expect = 4e-47 Identities = 910/1423 (64%), Gaps = 34/1423 (2%) Strand=Plus/Minus Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 ||||||| ||||| || ||||| ||||| || || || | || | | ||| || || | Sbjct 2767 CATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACG 2708 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 ||| || | |||||| || || || || | || ||||| ||||| || | ||| | || Sbjct 2707 CATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGT 2648 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 | | | | || || || ||| |||| || || || || || | || |||| || | Sbjct 2647 GGCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGT 2588 Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCAT 71677 | || || | | | || || |||||| | || || | || || || | Sbjct 2587 TAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGT 2528 Query 71678 CTATTACAAAC--ACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 | |||||| | || || || ||||| |||| || || ||||| ||||||| | Sbjct 2527 CCTCCACAAACTTAGGT--AAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGG 2470 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | ||| | || | ||| ||| | ||||| | ||| || || | ||| || Sbjct 2469 CGACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTG 2410 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 || || ||| ||| || |||||| | || ||||| || || || ||||| Sbjct 2409 CTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAAT 2350 Query 71856 CTGAGATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATATTCTTGT-ATCT 71912 ||| | |||| ||| ||| ||| | | || | || || ||| | |||| | | Sbjct 2349 CTGCGCATCTAAAAT-GCTGAACCATAGCTGCT-GCGCATTAATTGT---CTTGCGAGCG 2295 Query 71913 CTTTTCTC--TTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAGCATT-GT 71968 | | ||| ||||||| | | ||| || ||| ||||||||||||||||| ||| | || Sbjct 2294 CGTCCCTCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCA-GCACTCGT 2237 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 | ||||| ||| |||||||| | || ||||| |||| | | | || |||| Sbjct 2236 AGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTT 2177 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||||||| |||||||||||||| ||||| |||| || | | || ||| || | Sbjct 2176 TCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCAT 2117 Query 72089 TTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 | || | |||||| || || || ||| | | | || | ||||||||| |||| Sbjct 2116 TACCG---TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCA 2060 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 ||||||| || | ||| |||||| ||| || || || | ||||| || |||| Sbjct 2059 AGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGT 2000 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 ||| | || | ||||| ||||| || || || || | |||||| || || |||| Sbjct 1999 CGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATAT 1940 Query 72266 AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 |||| | |||| || || ||| || | || || || || ||| ||| || | Sbjct 1939 AGCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAA 1880 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 | | || ||| | || || || ||||| || || || || ||||||| ||| | Sbjct 1879 TGCACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTA 1820 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 ||| |||||| |||| |||| | ||| |||||| |||||||| || || || | | Sbjct 1819 GTAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCG 1760 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 | || ||||| | || | ||||| | | ||||||||| | ||| | || |||| Sbjct 1759 CATGAGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGT 1700 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 | || || |||| || || ||||| | | || || |||| || |||| || Sbjct 1699 TCTTGTGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGACTTTTC 1640 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 ||| | || | || ||| || | ||||| || || ||||||| || || Sbjct 1639 CATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAA 1580 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCA 72685 |||| || |||| ||| || | || || || | ||| || | | | || || || Sbjct 1579 AGTCCCGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTTGTGCTGCATCACGATCTC-- 1522 Query 72686 TGGTGATACTT-----GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740 || |||| | | || | ||||| | || |||| || |||| || Sbjct 1521 --GT-ATACATCATCAGCTATGAGCGGAGCCGCTGCTCCTGTTTTCTCATGCACATTCTT 1465 Query 72741 GAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800 | || | | || |||||||| | || ||||| | |||||||| |||||| || Sbjct 1464 GTGGAACACGTTAATGTTGTCACTAAAGACCTTGTTTGTATTCTTGTGTAAATTTGACAC 1405 Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTA 72843 ||| || | || ||||| ||| | | ||||||||||| ||| Sbjct 1404 GGCAATACGTGCCGCTAGCTTGGAAAAGTCTGGATGTTGGGTA 1362 >seq3976 Length=80323 Score = 196 bits (216), Expect = 6e-45 Identities = 424/628 (68%), Gaps = 15/628 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| | ||| || || || ||||| ||| ||||| | |||||||| ||||| || | Sbjct 36074 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 36133 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | | || || ||||| || ||||| || || |||||||| ||||| ||| || || ||| Sbjct 36134 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCA 36192 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || ||||| || |||||||| | ||||| || | || | || | || | || Sbjct 36193 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 36252 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | | | |||||| | ||||||| ||| ||||| || ||||| || ||||| || Sbjct 36253 CGGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCA 36312 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || ||| | ||||| | ||| || | || |||| ||||||||| || | || Sbjct 36313 ATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGT 36372 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||| | || || ||||| || || || || || ||||| ||||| || || | || Sbjct 36373 GAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCT 36432 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGT 42470 || | || || ||||| | | ||| ||||| || | ||| || ||||| || || | Sbjct 36433 TCAGGTACTTGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAATGCCAT 36490 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTA 42527 |||||||||||||||| || | ||||| || ||||||| || | |||| || | Sbjct 36491 CACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCC---GTAA 36547 Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 | | |||||||| |||| ||| | | || | ||||| | ||||| || || | Sbjct 36548 GTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAG 36607 Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 | || || || || ||||| | ||| | || | | ||||| || |||| ||||| | Sbjct 36608 CCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAAC 36667 Query 42648 TATTTGGATTTGGTGCAAGGATCGGTTC 42675 ||| || || |||| | |||||| Sbjct 36668 GATTCGGGTTCACAACAAGAAACGGTTC 36695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671102396404120