Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3976 113 4e-20 >seq3976 Length=80323 Score = 113 bits (124), Expect = 4e-20 Identities = 309/467 (66%), Gaps = 26/467 (6%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 |||| | ||| ||||| || ||||| |||||||| | ||| ||||||||||| || | Sbjct 36074 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 36133 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | | ||||| ||||| || || ||||| || | |||||| |||| |||| || || || Sbjct 36134 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAG-AGCAGAAGGAGCCA 36192 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || || || ||||| || | |||||||| | | | ||| | |||| | Sbjct 36193 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACG-----ATG 36247 Query 13322 TTACTC-----TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 || | || |||||| ||||| || ||||| | || || || || Sbjct 36248 ACACACGGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCG 36307 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG---TCTAAAATATAAGTATCTA 13433 | || || || | | || || ||| || ||| | ||| |||| ||| || Sbjct 36308 TATCAATAGCACGCAGGAGATGATCTTTCTC--TACAGCATTCT-TAATA----TATGTA 36360 Query 13434 TCAATAAGC----TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489 ||||||||| ||| | || || |||||||| || || || ||||| ||||| ||| Sbjct 36361 TCAATAAGCAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAA 36420 Query 13490 AAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTA 13549 || || | ||| || | ||| || ||||| | ||| | || | || || || Sbjct 36421 AAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTAAAGTTCATGGCGAGATTCTCATTC 36480 Query 13550 ACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 || || || ||||| || |||||||| ||||| | ||||||||||| Sbjct 36481 ACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAA 36527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430959356852574