Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq159 172 9e-39 >seq159 Length=42990 Score = 172 bits (190), Expect = 9e-39 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| | ||||| || |||||||| || || |||||||| |||||| Sbjct 42421 GCTAAGCGTCATCGCAAAGTGCTTCGTGACAACATCCAGGGCATTACCAAGCCTGCTATC 42480 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| ||||||| | | ||||| |||| | Sbjct 42481 CGTCGTCTCGCACGTCGTGGTGGTGTAAAGCGTATCTCTGGTCTCATTTATGAGGAGACT 42540 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | |||||| ||| ||| || | ||| | || || || ||| Sbjct 42541 CGTGGTGTCCTGAAGGTGTTCCTCGAGAACGTCATTCGTGACTCGGTCACTTACACGGAG 42600 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || || | ||||| |||| || || | || |||||||| Sbjct 42601 CACGCCCGTCGTAAAACCGTGACGGCAATGGACGTCGTATACGCCCTCAAGCGTCAAGGA 42660 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || || ||||| Sbjct 42661 CGTACCCTGTACGGCTTTGG 42680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071188935191