Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3976 210 3e-49 seq4330 185 1e-41 >seq3976 Length=80323 Score = 210 bits (232), Expect = 3e-49 Identities = 417/612 (68%), Gaps = 19/612 (3%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| | ||| || || || ||||| ||| || || | ||||||||| ||||| || | Sbjct 36074 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 36133 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | || || ||||| || ||||| || || |||||||| || || ||| || |||| Sbjct 36134 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAG 36193 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-------AC-C 33467 | ||||| || |||||||| | |||||| || | || | || | || || | Sbjct 36194 AGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACAC 36253 Query 33468 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33527 || | | || |||||| | ||||||| ||| ||||| || ||||| || ||||| Sbjct 36254 GGGGGTCACA-----CCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGT 36308 Query 33528 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 33587 || || ||| | ||||| | ||| || | || |||| ||| ||||| || | Sbjct 36309 ATCAATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAG 36368 Query 33588 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 33647 || ||| | ||||| ||||| || || || || || ||||| ||||| || || | Sbjct 36369 CAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCG 36428 Query 33648 AGCCTC-GGTAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTAT 33704 ||| || |||| | || ||||| | | ||| |||| || | ||| |||||||| || Sbjct 36429 AGCTTCAGGTACT-TGCACTTCATTGCTAAA--GTTCATGGCGAGATTCTCATTCACAAT 36485 Query 33705 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 33764 || ||||||||||||||||| || | ||||| || ||||||| ||| | || Sbjct 36486 GCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGT 36545 Query 33765 TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 33824 ||| | |||||||| |||| ||| | | || | ||||| ||||||| || || Sbjct 36546 AAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGA 36605 Query 33825 TGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||||| || || || ||||| | ||| | ||| | | || || || |||| ||||| Sbjct 36606 AGCCTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAA 36665 Query 33885 TCTATTTGGATT 33896 | ||| || || Sbjct 36666 ACGATTCGGGTT 36677 >seq4330 Length=10061 Score = 185 bits (204), Expect = 1e-41 Identities = 901/1418 (64%), Gaps = 28/1418 (2%) Strand=Plus/Minus Query 62634 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 62693 ||||| ||||| || || || ||||| || || || | || | | ||| || || | | Sbjct 2765 TAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTTTCGAACGCA 2706 Query 62694 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62753 || || | |||||| || || || || | || ||||||||||| || | ||| | || Sbjct 2705 TAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCACAGGGCGGTGG 2646 Query 62754 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62813 | | | || || || ||| |||| || || || || || | || |||| || || Sbjct 2645 CGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAATAACCTTGTTA 2586 Query 62814 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62873 || || | | | || || |||||| | ||| || | || || || || Sbjct 2585 AGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAAGACACCGTCC 2526 Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 |||||| | || || ||||| |||| || || ||||| ||||||| | | Sbjct 2525 TCCACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGAC 2466 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | ||| | |||| |||| ||| | ||||| | ||| || || | ||| || || Sbjct 2465 GTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGG 2406 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || ||| ||| || |||||| | || || ||||| || || |||||||| Sbjct 2405 TTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGC 2346 Query 63054 GATTCTATAATCGCTTT-CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63111 | |||| ||| ||| ||| | | || | || || ||| | || | | | | Sbjct 2345 GCATCTAAAAT-GCTGAACCATAGCTGCT-GCGCATTAATTGTC--TTGCGAGCGCGTCC 2290 Query 63112 CTC--TTTCGTATAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATC 63168 ||| ||||||| | ||| || ||| ||||||||||||||||| | || | Sbjct 2289 CTCCTTTTCGTACTTTTCATA-AAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAG 2231 Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63228 ||||| ||| | |||||| | || ||||| || | | | | ||| |||||||||| Sbjct 2230 CAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAA 2171 Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288 | |||||||||||||| ||||| |||| || | | || || || || || Sbjct 2170 ACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCG- 2112 Query 63289 TATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63345 | |||||| || || || ||| | | | || | ||||||||| |||||||||| Sbjct 2111 --TGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATA 2054 Query 63346 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63405 | || | ||| |||||| ||| || || || | ||||| || |||| ||| Sbjct 2053 TAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAA 1994 Query 63406 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTC 63465 | || | ||||| ||||| || ||||| || |||||| || || |||||||| Sbjct 1993 ACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAGCTGT 1934 Query 63466 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 | |||| || || || || | || || || || ||| ||| || || | | Sbjct 1933 TAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCACG 1874 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | ||| | || || |||||||| ||||| || || |||||| ||| |||| || Sbjct 1873 CACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAA 1814 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 |||| |||| |||| | ||| |||||| |||||||| || || || | || || | Sbjct 1813 AACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGAG 1754 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705 |||| | || | ||| | | | ||||||||| | ||| | | |||| | | Sbjct 1753 TAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGAATATTGTTCTTGT 1694 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 | || |||| || || ||||| | | || || |||| || |||| ||| | ||| Sbjct 1693 GGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACGA-CTTTTCCATTA 1635 Query 63766 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63824 || || || ||| || | ||||| || || ||||||| || |||||| Sbjct 1634 ACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCATACTCAAAGTCC 1575 Query 63825 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 63884 || |||| ||| || | ||||| || | ||| || | | | || || || || Sbjct 1574 CGGTCGTGAATGATTGCAGAGTTTAGCTCATCTTTGTGCTGCATCACGATCTC----GT- 1520 Query 63885 ATACTT-----GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATA 63939 |||| | | || | ||||| | || |||| || |||| ||| | Sbjct 1519 ATACATCATCAGCTATGAGCGGAGCCGCTGCTCCTGTTTTCTCATGCACATTCTTGTGGA 1460 Query 63940 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTA 63999 | | | || |||||||| | || ||||| | |||||||| |||||| ||||| | Sbjct 1459 ACACGTTAATGTTGTCACTAAAGACCTTGTTTGTATTCTTGTGTAAATTTGACACGGCAA 1400 Query 64000 TTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 64037 | | || ||||| ||| | | || |||||||| ||| Sbjct 1399 TACGTGCCGCTAGCTTGGAAAAGTCTGGATGTTGGGTA 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622913039132920