Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4330 134 1e-26 seq1055 105 6e-18 seq452 96.9 3e-15 >seq4330 Length=10061 Score = 134 bits (148), Expect = 1e-26 Identities = 727/1139 (64%), Gaps = 40/1139 (4%) Strand=Plus/Minus Query 145033 GATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACG 145092 ||||| || | || | ||||| || |||| | ||||| || || | |||||| || Sbjct 3096 GATCAGCTCTTTCATCAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCG 3037 Query 145093 CAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGT 145152 |||| ||| |||||| | || || | |||||||| || || ||||| ||||| || Sbjct 3036 GTTGTACATGTTCGACGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGT 2977 Query 145153 CGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTC 145212 || || || ||||| ||||| | || || ||||| | ||||||||| | | || Sbjct 2976 CGAAGCAGTAGGCATAGGAGCCACTAGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTT 2917 Query 145213 TTCCTTTAGCGTACCCCAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTA 145269 ||||| | | ||| ||||| || || | ||| | || ||||||||||| | Sbjct 2916 CTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGAGGACGGGGTGACACCCCACATGTCGAA 2857 Query 145270 CTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TT 145328 ||| || || |||| |||||| ||| ||| ||||| | || || | |||| | || Sbjct 2856 CTGGAAGATACCCTTGCTGGCCGGGGAGCCCTGAAATG-TCTCGTACGGGCCCAGTTCTT 2798 Query 145329 TGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGT 145388 |||| | ||| | ||||| | | |||| || ||||| ||| | | ||| Sbjct 2797 TGGCAATCTCCATGGATGTCTCCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGT 2738 Query 145389 TGAG--CAGCATCGCTTCATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCATCGG 145445 | || || | || | ||||| ||| || |||| | || || | |||||||||| Sbjct 2737 TCAGTTCACGA--GCCTGCTCGCTTTCGAAC-GCATAGTTCATGAGAATGAAAGCATCGG 2681 Query 145446 CGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACT 145505 | || ||||| | || | ||| | || || || ||||||| | | | ||| Sbjct 2680 CCAGACCCTGAACACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTG 2621 Query 145506 CGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTA 145564 | | || || | | | || ||| |||| || || | ||| || || ||||| || Sbjct 2620 CAACCGGGTAGTAGTTGAC-GTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTC 2562 Query 145565 ATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACG 145624 | | || ||| | |||| || || | ||| | ||||| | || | Sbjct 2561 ACATCATACAGCTTCTTGTAGTCGAA--GA-CACCGT---CCTCCACAAACTTAGGTAAA 2508 Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTC 145683 || | |||||||| || || || ||| ||| | ||||| || | || | | | ||| Sbjct 2507 GCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGACG-TATACTCCATTACCTC 2449 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 |||||| || || || ||| || || ||||| ||||| || || | |||| Sbjct 2448 ACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGC 2389 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACG 145803 |||||||| ||||||| | || |||| ||||| | ||||| || ||||| | Sbjct 2388 TGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGCGCATC-----TAAAATG 2334 Query 145804 GTGCA----AG-TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTC 145858 || | || | ||||||| | || | ||| ||||| | |||||| || Sbjct 2333 CTGAACCATAGCTGCTGCGCATTAATTGTCTTGCGAGCGCGTCCCTCCTTTTCGTACTTT 2274 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 || ||| ||| ||| || || |||| ||| | || | ||| | ||| ||| Sbjct 2273 TCATAAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAGCAGGAGCTTCGTTCGGA 2214 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | | ||| ||| || || | || || | |||||||| ||| || | ||| Sbjct 2213 CAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCAT 2154 Query 145979 AGCGCGTACATCAAGTCGCGCGCT--TTGCAATCCTCAGCACCCATGTTTCGCTTCAAAT 146036 || ||||| | ||||| |||||| |||||| ||| ||| |||| || | Sbjct 2153 AGAGCGTAGAATAAGTCACGCGCTCGGTGCAAT--TCATTACCGTGGTTTTTACGCAGGT 2096 Query 146037 TAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTT 146095 || | ||| | | | ||| || |||||||| || | || | || | || |||||| Sbjct 2095 CTAG-AAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTG 2037 Query 146096 CGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||||| ||||| |||||||||| || || ||| |||||| || || | |||||| Sbjct 2036 CGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAAACACCCGTAACATGGG 1978 >seq1055 Length=24595 Score = 105 bits (116), Expect = 6e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||| ||||| || || || || ||| || ||||||||||| || ||| Sbjct 13497 CCTTCTGAATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGA 13556 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || || || ||||| ||||| |||||||||||||| | | Sbjct 13557 TCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 13616 Query 131165 CCA--CAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 | | ||| |||| | ||| | ||| | |||| ||| || || || | ||| ||||| Sbjct 13617 CAATGCAG--TCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTAC 13674 Query 131223 GAAAATCTGCATGA 131236 || |||||||||| Sbjct 13675 AAAGATCTGCATGA 13688 >seq452 Length=4125 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| ||||| || || | ||| |||||||||||||||||||| || ||| Sbjct 858 CCACCACGAAGACGTAGCACCAAGTGCAAGGTTGACTCCTTTTGAATGTTGTAGTCCGCT 799 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | ||||| |||||||| || || |||| | ||| ||||||||||| || Sbjct 798 AACGTACGGCCA-TCCTCCAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGG 740 Query 131127 GATTCCT 131133 ||||||| Sbjct 739 GATTCCT 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471986915998080