Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq925 134 3e-26 seq1055 87.8 3e-12 seq452 86.0 1e-11 >seq925 Length=32479 Score = 134 bits (148), Expect = 3e-26 Identities = 432/662 (65%), Gaps = 24/662 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| || ||||| |||| ||| ||| || || |||||| ||||||||||| Sbjct 12199 CGCCACTGAATATACTGATTGGCTGTCTCGTCGAGATGCGACTCAATGTGGTGGAAAGCG 12140 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| |||||||||||||| || | ||||| Sbjct 12139 TGCTGAGCCACGTAGGCAAAACGCATGGAAGGATGCTTCCACACCTGTCCACTCGTCGGC 12080 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | ||| || ||||| | || || ||||| ||||| |||| Sbjct 12079 TCAACCTCACCAGTCAGCATCTTAATCAGCGTCGATTTACCGGCACCGTTGGGTCCAAGT 12020 Query 225161 ACGCCAATCCGGGATGACATTGC-AAC--CTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217 || |||| || |||| || || | |||| | |||| | | || ||| Sbjct 12019 ACAGCAATACGACTAGACAGAGCGCACGTCACCGAGATGTTGTTGATCGACGGCTTGGGG 11960 Query 225218 ---CCAG---TTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 |||| ||||| | || ||| | ||| ||||||| ||||| Sbjct 11959 GTTCCAGGATACTGGTACG---AG--CACTTC-GTCAGACGAATGATGGGCTTACCCTTG 11906 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC---C 225328 | ||| | | ||||| || ||||| |||||| ||| |||| ||| | Sbjct 11905 TTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGTAAACT---TCACATTGTCCGAC 11849 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCG 225388 | ||| |||||||| | ||||| || || |||| ||| || || || || Sbjct 11848 TCCAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGCTCCACAAAACGGGAAAGATTGCCC 11789 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || || | |||||| || ||||||| |||| ||| | ||| || | |||| Sbjct 11788 TTGTAGATCTTCAGCTTGCGG---GTCTCGTAGTGAATAATGTTTGTGCAGACCGTGTCA 11732 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||||||||||||||| ||||| || || |||| || || ||||| ||| | |||| Sbjct 11731 AGGAAGCCAGAGTCGTGCGACACCATAATCGACGTTACATTTGTCAGACCCGTCAGGTAG 11672 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | ||||| || ||||| ||||||||| ||||| || || || || || | || | Sbjct 11671 TTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGGTTCGTCGGCTCATCAAGCAACAAG 11612 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || | || ||||| || | || || ||||| ||||| || || || Sbjct 11611 ATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCCAATTTCATCTTCCAACCACCAGAA 11552 Query 225629 AG 225630 || Sbjct 11551 AG 11550 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 224437 GAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGA 224496 |||||| || ||||| ||| | || ||||| ||| ||| || || ||| || | Sbjct 12755 GAATTCGTTGTGGTGAGTAATCATAACCACACCACCGTTGAACTCCTTAATGGCCGAAGC 12696 Query 224497 AAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTG 224556 ||| || |||||||| || ||||||||| ||||||| |||||||| || | | | ||| Sbjct 12695 AAGAGCACCAAGCGAGTCACGGTCAAGGTAGTTCGTGGGCTCATCAAGCACAAGGATGTG 12636 Query 224557 GGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCC 224616 ||| | |||||| ||||| | | ||| | |||||||||||||| || || | || Sbjct 12635 CGGGTTCAGCCACATAGCTGCGGCCAGCACAACTTTCACCTTCTGACCACCGGACAAACC 12576 Query 224617 GCGGATCCGCGAGTGAGT 224634 ||| || || ||||| || Sbjct 12575 GCGCATACGTGAGTGGGT 12558 Score = 89.7 bits (98), Expect = 9e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 |||||||||||||||||||| || | ||| || || | || || ||| || ||| Sbjct 11365 GGGAAGCCCTCCAGCTGGCCGTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCG 11306 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 || ||||| || |||||| | | || ||||| | | || || | ||||| Sbjct 11305 TTAGGACCACACAGACCGTAACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAAC 11246 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 || ||| | |||||||||||||| ||||||||||||| ||| ||||| Sbjct 11245 AGAATCATACCACCATAGGCAAGCGAGAACTCGCAATTGCAAAGGTC 11199 >seq1055 Length=24595 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || || || || || || || || | || ||||| | |||||| || || || || Sbjct 13499 TTCTGAATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATC 13558 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| |||||||| ||||||||||| || || || |||||| || Sbjct 13559 AGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 13618 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| ||| | | || || ||||| || ||||| || || || | ||||| || || Sbjct 13619 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAAAG 13678 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 13679 ATCTGCATGAT 13689 >seq452 Length=4125 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| || |||||| | || || |||| || ||||| ||||| Sbjct 655 CCTTCCTTGTCCTGAATTTTCTGCTTGACAGTGTCAATACTGTCCGCCGATTCCACTTCG 596 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || ||||| ||||||||||| || ||||||||| Sbjct 595 AGCGTAATGGTCTTGCCCGTAAGGGTCTTGACAAAAATCTGCATT 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921571860531640