Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3976 150 3e-31 seq4330 132 9e-26 >seq3976 Length=80323 Score = 150 bits (166), Expect = 3e-31 Identities = 483/734 (66%), Gaps = 33/734 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || || ||| ||| ||||| || |||||||| || |||| | || | Sbjct 36512 CTTGCCTTTTTTGCAGCCAGTGATGGCATTGTGAATGAGAATCTCGCCATGAACTTTAGC 36453 Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || ||||| |||| | || || |||||||| ||||| || || || || || ||||| Sbjct 36452 AATGAAGTGCAAGTACCT-GAAGCTCGCTGCTTTTACGGTTTTCAAATTGCTATCGAGAA 36394 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGA 42598 | ||||| ||||| || | |||||| | | || || || | || | || || Sbjct 36393 TATTCACTCGGAGGTCTATTC---ACTGCTTATTGATACATATATTAAGAATGCTGTAGA 36337 Query 42599 GCGTAACGGGCTGTTCAAG---GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | || | | || | || || || ||||| || || |||||||||| || | Sbjct 36336 G---AAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGTGTCAAGAAGAAAGCCAA 36280 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCC 42713 ||||| ||||| ||| | || |||| || ||| || || | || | || Sbjct 36279 TTGGGCACTCAAGTGGT--GTGACCCCCGTGTGTCATCGTACGCGGAACGTCTATTGGCG 36222 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 ||| | | || || ||||| |||||||| ||| ||||| ||| ||||| ||||||||| Sbjct 36221 TTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAAG 36162 Query 42774 CAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG 42832 | | | ||| |||||| || || | |||||||||||| || || || | || || || Sbjct 36161 AA-ACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGG 36103 Query 42833 GCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA---GCCCTC 42889 |||| | ||||||||| || ||| ||| ||||| | || |||| ||| | Sbjct 36102 TATGCACACGGACTTTGCTTGTCTCATGTACTCGA---AACTGGTTAACAAATTGCCAGC 36046 Query 42890 GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 || || || | | || || || || ||| || ||| | ||||| | Sbjct 36045 GA---GTCGTGTGCACGAGATTATTCGTGATGCTGTGACAATTGAGCACGAGTTTGTGCG 35989 Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 | ||||| || || || | ||||||||| | |||||||| ||||||| | Sbjct 35988 TGACTCGCTTCCTGTCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGA 35929 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCC--G 43067 || ||| || |||| ||| || | | ||||| | ||| | | || ||| | Sbjct 35928 GTTCGTGGCTGACCGTCTGCTATACTCACTGGGTGT-TGCC-AAGATTTATCATGCCAAG 35871 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 || ||||||| ||||| | |||||| | | ||||||||||||||||||||||| Sbjct 35870 AATCCATTCGACTGGATGGATATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAA 35811 Query 43128 CGCGTCGCCGACTA 43141 || || | ||| || Sbjct 35810 CGTGTGGGCGAGTA 35797 >seq4330 Length=10061 Score = 132 bits (146), Expect = 9e-26 Identities = 696/1098 (63%), Gaps = 36/1098 (3%) Strand=Plus/Minus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 ||||| | ||||||| | | ||||| || | ||||| || || | ||| | ||| Sbjct 3081 CAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGA 3022 Query 244141 GCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 || |||||||||| ||| |||| || || ||||| || || ||||| ||||| Sbjct 3021 CGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCAT 2962 Query 244201 GGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCG 244258 || | ||| |||| | ||| | | ||||||| | | || || | | || Sbjct 2961 AGGAGCCACTAGCAAAGAGTTGCGGATGCCGTGCTTAATCA--CGTTCTCCTTCAAGGCG 2904 Query 244259 TTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGC 244318 |||||||||| | || ||||| | | ||| ||||||||||| ||||| | Sbjct 2903 GTCCAGTCCCAAAGACC--AGAGGACGGGG----TGACACCCCACATGTCGAACTGGAAG 2850 Query 244319 AGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGC 244378 | ||||||||| | ||| ||||| | ||| ||| || || | ||| | | Sbjct 2849 ATACCCTTGCTGGCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATC 2790 Query 244379 TT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 | | | | || || | | || || ||||||||||| || || ||||||||| || Sbjct 2789 TCCATGGATGTC-TCCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTC 2731 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 || |||| ||| ||| | | ||| | ||||| | |||||||| ||||| Sbjct 2730 ACGAGCCTGCTCGCTTTCGAACGCATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTG 2671 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTA 244557 || || ||||| | || | ||| ||| ||||||| || || | || ||||| Sbjct 2670 AACACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTA 2611 Query 244558 AAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAG 244617 ||||| |||| || |||||||| ||||| ||||||| || | ||| | Sbjct 2610 GTAGTTGACGTCAATAACCTTGTTAAGGTTACGGGTGACCAC--------CTTCGTCA-- 2561 Query 244618 CAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGA 244676 || | | || | || |||| ||| || | ||||| ||||||| | Sbjct 2560 CATCATACAGC--TTCTTGTAG------TCGAAGACACCG-TCCTCCACAAACTTAGGTA 2510 Query 244677 GGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCT 244736 || || |||| |||||| ||||||||||| |||| || |||| | | || Sbjct 2509 AAGCCACAGACGCCAAGTTGCACACGGCCACCTCATCCGGCGACGTATACTCCATTACCT 2450 Query 244737 CGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGC 244796 | ||| | ||||||| | ||| ||||| || | ||| || |||||||| |||| Sbjct 2449 CACAGCACAAGTTACTGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGG 2390 Query 244797 AGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGT 244856 |||||||| ||||||| || ||| | || ||||| | ||| || | | | |||| Sbjct 2389 CTGCGTCCTTAAAGAGCATAAATGGCACGCCCGTCTCAATCTGCGCATCTAAAATGCTGA 2330 Query 244857 TCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGT 244916 ||| || | | || || | ||| ||||||| ||||| ||||| | Sbjct 2329 ACCATAGCTGCTGCGCATTAATTGTCTTGCGAGCGCGTCCCTCCTTTTCGTACTTTTCAT 2270 Query 244917 ACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCGGGGC-ACGACGCCGGGCA 244974 | || | |||||||||| |||||| ||||| || || || || || ||| || Sbjct 2269 AAAGCGTCTCGAACTCGTCTCCCCAGCACTCGTAGAGAGCAGGAGCTTCG--TTCGGACA 2212 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034 | | |||||||| ||| | | |||| | ||| || || || || ||||| || Sbjct 2211 GAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCATAG 2152 Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094 || | ||| | ||| | | | ||| || || ||| || | ||| || | Sbjct 2151 AGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCGTGGTTTTTACGCAGGTCTAG 2092 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 ||| ||||| |||||| | ||||| ||||||| ||| | ||| | || || || || Sbjct 2091 AAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTT 2032 Query 245155 GTTGCCTCCCTGGTCCAC 245172 | || || |||||||| Sbjct 2031 GCCTCCACCTTGGTCCAC 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944287414799120