Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq925 138 2e-27 seq3976 91.5 3e-13 >seq925 Length=32479 Score = 138 bits (152), Expect = 2e-27 Identities = 663/1037 (64%), Gaps = 33/1037 (3%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| || |||||||| |||| |||| ||| || Sbjct 12224 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGAATATACTGATTGGCTGTCTCGTCGAG 12165 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| ||| |||||||||||||| ||||| |||||||| |||| |||||| ||||| Sbjct 12164 ATGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCAAAACGCATGGAAGGATG 12105 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | || | | || || |||| |||||| || || Sbjct 12104 CTTCCACACCTGTCCACTCGTCGGCTCAACCTCACCAGTCAGCATCTTAATCAGCGTCGA 12045 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCA-- 333551 ||| || ||||| || || | ||| |||| | || | | || | | || Sbjct 12044 TTTACCGGCACCGTTGGGTCCAAGTACAGCAATAC--GACTAGACAGAGCGCACGTCACC 11987 Query 333552 TTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 333610 | ||||| | | || || || ||||||| | | | ||| ||| || Sbjct 11986 GAGATGTTGTTGATCGACGGCTTGGGGGTTCCAGGATACTGGTA-CGAGCACTTCGTCAG 11928 Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC-- 333668 ||||||| |||| ||||| | | ||||| || ||||| |||||| Sbjct 11927 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAGCCAGGCTCCGGGAACGT 11868 Query 333669 ---TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTC 333725 | ||| | ||| || ||| || ||||||| | | || || || | Sbjct 11867 AAACTTCACATTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCCGGCTTCTGC 11813 Query 333726 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 333785 | ||| || ||| ||||| |||||||| |||||||||| || | ||||| || Sbjct 11812 TCCACAAAACGGGAAAGATTGCCCTTGTAGATCTTCAGCTTGCGG---GTCTCGTAGTGA 11756 Query 333786 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 333845 ||||| ||||| || | ||| ||||| || |||||||| ||||| || | ||| Sbjct 11755 ATAATGTTTGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATAATCGACGTT 11696 Query 333846 ACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGG 333905 || | | || ||||||| | ||||||| ||||| || | |||| Sbjct 11695 ACATTTGTCAGACCCGTCAGGTAGTTTTCCAGCCACGCGACGTTCTTGACGTCCAAATGG 11636 Query 333906 TTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 333965 || |||||||| ||||| | | | | ||| ||| | ||||| ||||| || || | Sbjct 11635 TTCGTCGGCTCATCAAGCAACAAGATGTCTGCCTTCTGCAGCATGGCACGGGCCAGCTCC 11576 Query 333966 AGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA-ATATC 334024 | |||||| ||||| || || |||||||| || || ||| ||| | Sbjct 11575 AATTTCATCTTCCAACCACCAGAAAGAGTACCAACGCCCTGAGCTTGCATGTCAGGGGTG 11516 Query 334025 AAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTTA 334083 ||| ||| |||| | ||||| ||| || | || | | |||| ||| | Sbjct 11515 AAACCCACACCG--GCAAGAGTGTCCTCGACCTCCTTGCG---CGGAGTGTT---CTTCA 11464 Query 334084 CTTGTTCAT-CATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGA 334142 | |||| || | | ||| ||||| | | | || | || || || | | || Sbjct 11463 GATCCTCATCCACTAG-AATAAAGTCCACCACGGACAGCTCAGCCTCAGAAGCCTGCAGG 11405 Query 334143 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG-AGGGGAACCCTTCAAGCTGACC 334201 | ||| ||||| | |||| |||| | | ||| | ||||| || || ||||| || Sbjct 11404 TTGTGCTCCACAAACACAGTCTTCAGCTCGT-CGCGGCTAGGGAAGCCCTCCAGCTGGCC 11346 Query 334202 GTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 334261 ||| ||| |||||||||| || || ||||| ||||| || |||||||||||||| Sbjct 11345 GTTGGAAATGGCGCGCATCAACGTCGACTTACCACAACCGTTAGGACCACACAGACCGTA 11286 Query 334262 GCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGC 334321 |||| |||||||| || | || | |||||||| ||||| | |||||||| || Sbjct 11285 ACGGTGACCACGCTTTAGGCGAAGACGAGCATTGTTCAACAGAATCATACCACCATAGGC 11226 Query 334322 CAGAGAAAATTCACAAT 334338 || || || || |||| Sbjct 11225 AAGCGAGAACTCGCAAT 11209 >seq3976 Length=80323 Score = 91.5 bits (100), Expect = 3e-13 Identities = 286/436 (66%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| ||| | || || || |||||| | ||||||||||| ||| ||| Sbjct 36212 GTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCTATCTTTTGGCTCAAGAAACGTGGT 36153 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 |||||||||| || | | || |||||| | || ||||| || || || | ||| Sbjct 36152 CTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAATTAGTCGTGATGAAGGTATGCACACG 36093 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTCAA 243497 | || | | || ||||| || || || ||||| | ||| ||| || || | Sbjct 36092 GACTTTGCTTGTCTCATGTACTCGAAACTGGTTAACAAATTGCCAG-CGAGTCGTGTGCA 36034 Query 243498 ACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATG 243557 | || || || || || || || | || || | | ||| | |||| || Sbjct 36033 CGAGATTATTCGTGATGCTGTGACAATTGAGCACGAGTTTGTGCGTGACTCGCTTCC-TG 35975 Query 243558 CCG-GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACC 243616 || ||| |||||||||||||| | ||||||| | |||||||| || ||||| || |||| Sbjct 35974 TCGAGCTCATTGGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTGACC 35915 Query 243617 GCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTA 243676 | | | | | || ||| || || | || | ||||||| || || | || | Sbjct 35914 GTCTGCTATACTCACTGGGTGTTGCCAAGATTTATCATGCCAAGAATCCATTCGACTGGA 35855 Query 243677 TGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTAT- 243735 |||| | || ||||| ||||| || || ||||| ||||| || ||||| | || ||| Sbjct 35854 TGGATATGATCTCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCGAGTATT 35795 Query 243736 -CAACGCCCTGGTGTG 243750 ||| | |||||||| Sbjct 35794 CCAAGG--CTGGTGTG 35781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102818008838450