Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1055 107 2e-18 seq4330 105 6e-18 seq3976 91.5 1e-13 >seq1055 Length=24595 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||||||||| || || ||| ||| || || ||||| || ||||| ||||| Sbjct 13499 TTCTGAATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATC 13558 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || || ||||||||| |||||||||||||| | || Sbjct 13559 AGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 13618 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | ||| | ||| || || | || | || ||||| |||| ||| |||||||| Sbjct 13619 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAAAG 13678 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 13679 ATCTGCATG 13687 >seq4330 Length=10061 Score = 105 bits (116), Expect = 6e-18 Identities = 298/453 (66%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| || ||||| || ||||| ||| || | ||| | ||||||||| ||| | Sbjct 3378 GCGCATGTAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGGT 3319 Query 145818 CA--TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATG 145875 | | || || ||| || ||||||| | || || || || ||||| |||| Sbjct 3318 GAGTTTACTGAT--CGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAATG 3261 Query 145876 AAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTT 145935 ||| | | ||||| || | || |||| || | || || |||||||| | ||| Sbjct 3260 TAAGCACCACGGTCAGCCGACAGATCTAACACCGATTTCTGCTTGATTTCCCACACTGTT 3201 Query 145936 TTAAAGAGATCCTTGACGTGCTGGGGTATT-TCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | || ||||| || | || || || ||| || |||||||| ||| || Sbjct 3200 TTGTACTTCTCTTTGACATGGTCCGGAATGGTCTTCACCTTT-TGCACAGAACCACGGTC 3142 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGAT 146054 | || ||| | ||| || | || || || | || | || || | || | || || Sbjct 3141 GTTCAGTATCTGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTCTTTCAT 3082 Query 146055 GAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCT 146114 || |||| ||| || | | ||||| || || || || || | |||| ||| Sbjct 3081 CAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGA 3022 Query 146115 GGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 ||| ||||||||| |||||||||||||| || ||||| || |||| ||| |||||||| Sbjct 3021 CGTGTACGGCTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCAT 2962 Query 146175 GTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| ||||||||||| | | |||||| Sbjct 2961 AGGAGCCACTAGCAAAGAGTTGCGGATGCCGTG 2929 >seq3976 Length=80323 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| ||| | ||| | ||||||| || || || || ||||| ||||| Sbjct 35963 GGCATGAACTCGGCACTCATGTGTCAGTACATTGAGTTCGTGGCTGACCGTCTGCTATAC 35904 Query 47471 TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| || | |||||||||| || || ||||||||||||| | ||| | | || Sbjct 35903 TCACTGGGTGT-TGCCAAGATTTATCATGCCAAGAATCCATTCGACTGGATGGATATGAT 35845 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 ||||| | ||||||||||||||||||||||| || || ||||| ||| Sbjct 35844 CTCGCTACAAGGCAAGACCAACTTTTTCGAGAAACGTGTGGGCGAGTAT 35796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475474724724880