Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3976 123 3e-23 seq292 95.1 1e-14 >seq3976 Length=80323 Score = 123 bits (136), Expect = 3e-23 Identities = 506/783 (65%), Gaps = 20/783 (3%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || || || |||||||| ||||| ||||| || | || ||| | ||||| Sbjct 35797 TACTCGCCCACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGCGAGATCATATCCATC 35856 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC--CCAATCTGTTTGAGGAGAC 127349 | || ||||| ||||| | | |||| |||||| | ||| | || | || |||| Sbjct 35857 CAGTCGAATGGATTCTTGGCATGATAAATC-TTGGCAACACCCAGTGAGTAT-AGCAGAC 35914 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 127408 | || | ||| |||||||||||| | |||| | |||||||| || ||||| | | Sbjct 35915 GGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCATGCCAATGAGCTCGA 35974 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || |||| ||| | ||| | | |||||| |||||| || || | || || Sbjct 35975 CA-GGAAGCGAGTCACGCACAAACTCGTGCTCAATTGTCACAGCATCACGAATAATCTCG 36033 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAA--AGTCTTGAAGAGTTCC-ACA-GCAAA 127524 || | | | || | | | ||| ||| ||| | || | | ||| ||||| Sbjct 36034 TGCACA----CGACTCGCTGGCAATTTGTTAACCAGTTTCGAGTACATGAGACAAGCAAA 36089 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| | ||| || ||||| || || || |||||||||| ||||| ||||| Sbjct 36090 GTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCAT 36149 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||||| || ||||| | ||| || || | || || |||||||||||||| || || || Sbjct 36150 CAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTC 36209 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCAAACCACT 127703 || | || ||||| |||||||| || || | || | || | ||| |||||| Sbjct 36210 TACCGAAGCAAACGCCAATAGACGTTCCGCGTACGA-TGACACACGGGGGTCACACCACT 36268 Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTT 127763 | | ||||| | || || |||| || |||||||| || | || || | ||| | Sbjct 36269 TGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGAT 36328 Query 127764 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGT 127823 | || ||| | || || || || |||| || || |||||| || || Sbjct 36329 GATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGT 36388 Query 127824 GGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 | | ||| || ||| ||| | |||| || |||| ||||| || || || Sbjct 36389 GAA--TATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCAC 36446 Query 127882 CTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAA 127941 |||| | ||| || | || ||||||| ||||| ||||| | |||||||| Sbjct 36447 TTCATTGCTAAAGTTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAA 36506 Query 127942 CGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAG 128001 || || | || ||| || || | ||||||| || | || || ||||| || | ||| Sbjct 36507 GGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAG 36566 Query 128002 ATC 128004 ||| Sbjct 36567 ATC 36569 >seq292 Length=16601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 176782 GAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACC 176841 |||||||||||| || || ||||| ||||| | || || |||||||| || ||||| Sbjct 5119 GAGTTGCGCCACAGACGCATCGCGCACATTCAAAAGTTTGCCACGGAGAGGAAAGACACC 5060 Query 176842 GTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACC 176901 ||| || ||||| || || || | ||||| || ||||| || | ||| || || ||||| Sbjct 5059 GTACTGGTCACGCCCGACAACTGCAAGACCTGCCACTGCTAGTGCCTTTGCTGAGTCACC 5000 Query 176902 CTCCGTCACGATGAGCG 176918 || |||| ||| |||| Sbjct 4999 TTCGGTCAGGATAAGCG 4983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613473556798920