Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3976 150 2e-31 >seq3976 Length=80323 Score = 150 bits (166), Expect = 2e-31 Identities = 398/599 (66%), Gaps = 8/599 (1%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| | ||||||||||| |||| || || || | ||| || ||||| || Sbjct 36074 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 36133 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | || ||||| || || ||||| ||||||||||| || | | ||| ||| | Sbjct 36134 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAG 36193 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||| | ||| || || | || || |||| || || || || ||| | | Sbjct 36194 AGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACAC 36253 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | | | ||| || ||||| | ||| || | ||||| || || ||||| || | Sbjct 36254 GGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAA 36313 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 | || || | | | ||||||| | | | || || || || || | Sbjct 36314 TAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGTG 36373 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 |||| | |||||||| | ||||| || || |||||||| ||||||||||| || || | Sbjct 36374 AATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTT 36433 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCCGTC 133304 | || |||||||| | || ||| | || | | ||||| || || || ||||| || Sbjct 36434 CAGGTACTTGCACTTCATT-GCTAAA-GTTCATGGCGAGATTCTCATTCACAATGCCATC 36491 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 ||||| || |||||||| ||||| ||||| || ||||| || || ||||| | ||| | Sbjct 36492 ACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGT-AAGTG 36550 Query 133365 CTC-CCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422 | ||| || | | | | || || | ||| | ||| ||| | ||||| ||||| ||| Sbjct 36551 TTTTCCAATC-CTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCC 36609 Query 133423 TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 |||||||| |||||||| ||||| ||| | || || ||||||| |||||| || Sbjct 36610 TCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAACG 36668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500145371774080