Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq912 159 1e-33 seq4053 131 7e-25 seq841 111 6e-19 seq2797 87.8 7e-12 >seq912 Length=35270 Score = 159 bits (176), Expect = 1e-33 Identities = 338/502 (67%), Gaps = 7/502 (1%) Strand=Plus/Plus Query 451103 GATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAA 451162 |||| || ||| | ||||| |||| || |||| | | || ||| || ||||| Sbjct 5849 GATGTCAAGCGTCTGATTGGTCGTAAATACAATGACAAGTCGGTCCAATCGGACAAAAAG 5908 Query 451163 TTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAA 451222 || || ||||||| | | ||| || | ||||| || | ||||||||| | | || Sbjct 5909 TTGTTGCCTTATGAACTCATTAATAAAGATGGAAAACCTTTTATTCAAGTGACTGTCAAG 5968 Query 451223 GGTGA--AACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGA 451280 ||||| ||| || ||||||||||||||| | || | ||||| | || || |||| Sbjct 5969 GGTGAGAAACGTCAA--TTTGCTCCTGAAGAAGTCTCTGCCATGGTCTTGACAAAGATGA 6026 Query 451281 AAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCG 451340 | | | | ||| ||| |||||| | ||| |||||| || | || || || | Sbjct 6027 AGCAGATTTCGGAAGGATACATTGGTCGTGAAGTGTTTGATGCTGTTGTGACAGTCCCTG 6086 Query 451341 CTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAA 451400 |||| || || || || ||||| ||||| || || ||||| || ||||||||| | | Sbjct 6087 CTTACTTTAACGACGCTCAACGTCAAGCTACAAAGGATGCTGGTACCATTGCTGGTCTGA 6146 Query 451401 ATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAAT 451460 |||| || || ||||||||||| ||||| |||||| | || ||||| | | || Sbjct 6147 CCGTTCAACGGATCATTAATGAACCGACAGCTGCTGCTATTGCCTATGGCATTGACAA-- 6204 Query 451461 CAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATA 451520 || | || ||| || ||| | | || |||||| | ||||||||||| |||| Sbjct 6205 -GAAGGCTCAAGGAGAGAAGAATGTGCTGGTCTTTGATCTAGGTGGAGGAACCTTTGATG 6263 Query 451521 CTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTC 451580 | | || | || || | ||| || |||||||| |||||| || || ||||| | Sbjct 6264 TGACGTTGCTGGCGATCGATGGTGGTGTGTTTGAAGTCTTGGCAACGAACGGGGATACGC 6323 Query 451581 ATCTAGGAGGTGAAGATATTGA 451602 || | || || ||||| |||| Sbjct 6324 ATTTGGGCGGAGAAGACTTTGA 6345 >seq4053 Length=21002 Score = 131 bits (144), Expect = 7e-25 Identities = 458/704 (65%), Gaps = 21/704 (3%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| ||||||||||| || || | || ||||| ||||| | || |||| | || Sbjct 14007 ATTGGTATTGATCTTGGTACTACGTACTCTTGTGTGGGTGTGTGGAAAGATGGTCAGGTG 13948 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 || || || || ||| | ||| || || || ||||||||||| || | || Sbjct 13947 GAGATCATTGCCAATAGTGAGGGAAACCGTACGACCCCTTCATGGGTTGCATTCAATGAA 13888 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCCAAAAACA 451094 ||| | || | || |||| ||||| |||| | | | ||||| | |||| Sbjct 13887 AGTGAACGTCTCATTGGTGAAGCAGCTAAGATTCAA--GCAGCTGGTAATGCTACGAACA 13830 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA-AAA 451153 | || | |||||| |||||| | ||||| || | | | |||||| | || ||| ||| Sbjct 13829 CGGTGTTTGATGCCAAACGTATCATTGGACGCAGCTTTAGTGATGA-AGTGGTCAAGAAA 13771 Query 451154 GAGAAAAAATTCTTTTC--TTATGATGTAGTAAATCAAAAAGGA-AAGCCCTATATTCAA 451210 || |||| |||| | ||| || || || | | || ||| | ||| | Sbjct 13770 GATGCAAAACACTTTCCATTTACCATCAAGGAAGGAGACGATGATAAGGTCCTGATTGAG 13711 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || | | || || |||| || | |||| |||||||||| || || || ||||| || Sbjct 13710 GTTGAGTTCAAGGGAGAAAAGAAGAGTTTTACTCCTGAAGAGATCTCGTCGATGGTGCT- 13652 Query 451271 ACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAAT 451329 |||| ||||| |||||||||||| | | ||||| | | | | || || | Sbjct 13651 ACTACGTATGAAGGAAACAGCAGAAGCTTTTCTTGGTCAGACCATCTCACAGGCTGTTGT 13592 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 |||||| || ||||||||||| || ||| || ||| | || |||||||| || || Sbjct 13591 TACTGTACCTGCTTATTTCAACGACCAACAGCGTCAATCTACCAAAGATGCTGGTTCGAT 13532 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||||| | |||| || || ||||||||||| || || ||||| || || ||||| Sbjct 13531 TGCTGGTCTGGATGTCAAACGTATCATTAATGAACCGACGGCTGCTGCCCTTGCCTATGG 13472 Query 451450 ACTAGGAAAATCAA--AAGAAACAGAAGaaaa------aaaTATTTTAGTATTTGATTTT 451501 |||| | | || | || || | ||| ||| || | | ||||| || Sbjct 13471 TCTAG--ATACGAACGCTGGCACGGATGGAAAGGTGTGCAATGTTCTGATTTTTGACTTG 13414 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 ||||| || || |||| || | ||||| || ||| |||| | ||||| || ||| Sbjct 13413 GGTGGTGGTACCTTTGATGTATCAATCCTTTCGATCGAAAATGGTATCTTTGAGGTCAAG 13354 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || |||||| || || | || ||||| || |||| || Sbjct 13353 TCTACGGGTGGTGACACGCACTTGGGTGGTGAGGACTTTGACAA 13310 >seq841 Length=44833 Score = 111 bits (122), Expect = 6e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || ||||| || || || ||||| || || || || || | || || || ||| Sbjct 17096 TCCATGGTCCTAACGAAGATGAAGGAGACGGCTGATGGATTCCTGGGCAAACCTGTAACT 17037 Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 | || || |||| || || |||||||| ||||| ||||||| ||||| ||||| ||| Sbjct 17036 CAAGCTGTGGTTACGGTACCGGCTTATTTTAATGACTCACAACGTCAAGCTACTAAGGAT 16977 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || | ||||||||| | | || ||||| || || |||||||||||||| ||||| Sbjct 16976 GCTGGTAAAATTGCTGGTCTGGACGTACTTCGGATCATCAATGAACCTACAGCTGCTGCC 16917 Query 451439 CTAGCATATGG 451449 || || ||||| Sbjct 16916 CTTGCCTATGG 16906 >seq2797 Length=3805 Score = 87.8 bits (96), Expect = 7e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| ||||| || || || ||||||||||| | || || ||||| || || || | Sbjct 2131 ATGCAGTGATTACGGTACCGGCCTATTTCAATGACTCGCAGCGTCAAGCCACCAAGGACG 2190 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || |||||||| | ||||| || || ||||| || ||||| || || |||||| Sbjct 2191 CCGGTGCCATTGCTGGACTTAATGTGCTCCGTATTATCAACGAACCGACGGCTGCTGCTA 2250 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 2251 TTGCCTATGGTCT 2263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975607347955796