Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4330 147 3e-30 seq3976 129 7e-25 seq41 104 3e-17 seq16 93.3 5e-14 >seq4330 Length=10061 Score = 147 bits (162), Expect = 3e-30 Identities = 407/614 (66%), Gaps = 9/614 (1%) Strand=Plus/Plus Query 111627 ATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGAC 111686 ||||| || || | |||||||| | | ||||| | | | ||||||||| ||||| Sbjct 1672 ATGCGCGTTGCTTTAGGTATCCACAAGAACAATATTCAAGCGGCTTTGGAGACGTACGAG 1731 Query 111687 AAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACC 111745 |||||| | | || | || || | || || ||||| | || || ||||| || || Sbjct 1732 TTGATGTCTCAGAAGTTTTTTACTC-ATGCGACGCCAACGTTGTTTAATGCTGGAACTCC 1790 Query 111746 AAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCAT 111805 | |||||| ||||| ||||| | | || | |||| ||||| || | || || Sbjct 1791 TCGCCCCCAACTGTCCTCGTGTTTTTTACTAGCTATGCAGGATGATTCGATTGAAGGTAT 1850 Query 111806 TTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCA 111865 ||| | ||| | | ||||||| || || || ||||||||||| || || || Sbjct 1851 TTATGACACATTGAAGCAATGTGCGTGCATTTCCAAATGGGCTGGTGGGATTGGCATTAG 1910 Query 111866 CATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGG 111925 || || | | |||||| || |||| | || || |||||| || | || Sbjct 1911 TATGCACAACATACGAGCCACTAACAGCTATATTCGTGGCACTAATGGTTCCTCTAACGG 1970 Query 111926 TATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTG--GG 111983 || ||||| ||| | || || ||||||| ||| || || || || |||||| || || Sbjct 1971 GATCATTCCCATGTTACGGGTGTTTAACGACACGGCCCGATACGTGGACCAAGGTGGAGG 2030 Query 111984 C-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTT 112042 | ||||| ||||| | || | || | ||||| ||||| || || | | ||||| Sbjct 2031 CAAACGCAAAGGATCCTTTGCTATATACTTGGAGCCGTGGCATGCCGACGTGTTTGAGTT 2090 Query 112043 CCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCG 112101 || || ||||| ||||| ||| |||| || | | || || || | |||| || Sbjct 2091 TCTAGACCTGCGTAAAAACCACGGTAATGA-ATTGCACCGAGCGCGTGACTTATTCTACG 2149 Query 112102 CTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCT 112161 |||| |||||||| ||||| || ||||| | || || | | |||||| ||| | | | Sbjct 2150 CTCTATGGATTCCTGATCTGTTTATGAAACGGGTGGAAGCTAATGGCAAGTGGAGTTTAT 2209 Query 112162 TTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTC 112220 | ||||| || | || || | ||||| ||| ||| | ||| || ||||| || | || Sbjct 2210 TCTGTCCGAACGAAGCTCCTGCTCTCTACGAGTGCTG-GGGAGACGAGTTCGAGACGCTT 2268 Query 112221 TACACAAAGTACGA 112234 || ||||||||| Sbjct 2269 TATGAAAAGTACGA 2282 >seq3976 Length=80323 Score = 129 bits (142), Expect = 7e-25 Identities = 195/274 (71%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||||||| ||| || ||||| | || ||| | || || | || | |||||| Sbjct 36356 TATATTAAGAATGCTGTAGAGAAAGATCATCTCCTGCGTGCTATTGATACGATCCCATGT 36297 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT--TCCTTTG 102177 | | |||||||| ||||||| | ||||||| ||| | || | || || | | Sbjct 36296 GTCAAGAAGAAAGCCAATTGGGCACTCAAGTGGTGTGACCCCC-GT-GTGTCATCGTACG 36239 Query 102178 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 102237 | || || || || || ||||| | || || || || ||||||||||| ||||||||| Sbjct 36238 CGGAACGTCTATTGGCGTTTGCTTCGGTAGAAGGCATTTTCTTCTCTGGCTCCTTCTGCT 36179 Query 102238 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 102297 |||| | |||||||||||| || ||||| ||||| ||||| ||||||| |||||||| | Sbjct 36178 CTATCTTTTGGCTCAAGAAACGTGGTCTGATGCCTGGTCTTAGCTTCTCGAACGAGCTAA 36119 Query 102298 TCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | |||||| || || | ||| || ||||| Sbjct 36118 TTAGTCGTGATGAAGGTATGCACACGGACTTTGC 36085 >seq41 Length=30697 Score = 104 bits (114), Expect = 3e-17 Identities = 303/456 (66%), Gaps = 17/456 (4%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 || || ||||||||||| | || || | ||||| |||||| |||| ||||| | || Sbjct 13129 TCGAAACGACCTGGGCGCAAGATAGCCTTGTCAAGAATATCAGCGCGGTTCGTACCAGCA 13188 Query 15948 ATGACAACAATACCTGTTTCGTT---ATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || || | |||| ||| | || |||||||||||||| | | ||||||| Sbjct 13189 AGCACCACCACACCT---TCGCTCGAATTGAAACCATCCATCTCAACTAGCAACTGGTTA 13245 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--TGCTTTC-C 16060 | || | ||| || || ||||| || | | | | | || || | ||| | | Sbjct 13246 AGCGTGTTTTCGCGCTCGTCATT-GCCGCCCGAGAAGTTACCCTTGCTTCGTGCACGCGC 13304 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120 ||| ||||| || ||||| ||||| ||||| || || |||| | ||||| | | ||| Sbjct 13305 CACTGCATCGATTTCATCGATGAACACGATACACGGAGCATTTGCACGAGCCTCCTTAAA 13364 Query 16121 GAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 ||||| || ||||| || || ||||| || || |||||||| | || | | | Sbjct 13365 CAGATCACG--CACGCGTGACGGACCCACGCCTACGAACATCTCGATGAAATCCGACCCC 13422 Query 16179 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 ||| | ||| || ||| ||| |||||| || |||| || | || |||||| Sbjct 13423 GAAATGCTAAAGAATGGCACACTAGCTTCACCAGCTGTGGCCTTCGCCAACAGCGTCTTA 13482 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 16298 |||||||| ||| ||| | || || || || ||||||||||| ||| | | | Sbjct 13483 CCCGTACCAGGCGGACCAACAAGCAGCGCCCCCTTAGGAATCTTGGCACCAAGGTCCATG 13542 Query 16299 TATCTC-TCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | | | || |||||| ||| || ||||||| ||| Sbjct 13543 AAACGCTTCTGGTTGC-GAAGGAAGTCCACAAACTC 13577 >seq16 Length=23387 Score = 93.3 bits (102), Expect = 5e-14 Identities = 261/389 (67%), Gaps = 30/389 (8%) Strand=Plus/Plus Query 176701 TGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATC 176760 |||||| |||| ||||| | |||| | |||||||||||||| ||||||| ||| Sbjct 11485 TGGCCAAAAGTGATGAATGAGGTTGATCACCAGACCCTTGATGTGACTGCCGTCGTGATC 11544 Query 176761 GGCATCCGTCATGATCATGAGACGACCATACCG-AAGC---TCGGAAACATCTTGATAGT 176816 ||| | ||||||||| | ||||||||| |||| ||| | || | |||| Sbjct 11545 TTGATCTGCCATGATCATCAAGTGACCATACCTCAAGCCCTTCGTAGAC----TCGTAGT 11600 Query 176817 CCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA----CTCTTGGTTTG 176870 | || | | ||||| | |||||| || |||| ||| ||| | || Sbjct 11601 TTTCGCCGTACTTGAGACCAAGGATCTT---GACCACGTTTTGAATCTCCTCATTCTTCA 11657 Query 176871 A--TGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGA 176927 | | |||| |||||| || |||||||| || | || ||| || || | |||| Sbjct 11658 AAATTTGAG---TGTGACTT--GCTTCACGAACGTT-TAGCATCTTACCTCGCAATGGGA 11711 Query 176928 AGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAG 176987 | ||||| |||| ||| | ||||| |||| || || |||| || | ||||| || | Sbjct 11712 AAACACCATAGTAATCTCTGCCAACGACAGCAAGGCCACCAACAGCAACAGTTTTGGCGG 11771 Query 176988 AATCACCCTCTGTCACGATGAGTGTACA--CTTGCCAGATTGTGCCGTACCCGCCTTGTT 177045 |||| || ||||| | || || || || ||| | || || ||||| || | || Sbjct 11772 AATCGCCTTCTGTTAGAATCAGAGTGCAATCTTTGCT--TTTCGCTGTACCAGCGTGATT 11829 Query 177046 CGCATCATCCAATTTGGGAATACCAGTAA 177074 |||||||||| ||||||||||||||||| Sbjct 11830 GGCATCATCCAGTTTGGGAATACCAGTAA 11858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620708360038640