Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4330 178 2e-39 seq41 132 6e-26 seq3976 120 4e-22 >seq4330 Length=10061 Score = 178 bits (196), Expect = 2e-39 Identities = 1146/1824 (63%), Gaps = 38/1824 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 |||||||||||||| || || || ||||| ||||| | ||||| || | |||||| Sbjct 3371 TAATACATACCCGTCTTAAGCCCCTTTTTCCAAGCGTAAAAGTGCATGGAGGTGAGTTTA 3312 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||| | ||||||| ||| ||| | |||| Sbjct 3311 CTGATCGTCGGGTCGGCGATGTGAATGTTAAGCGACTGACTCTGGCAAATGTAAGCACCA 3252 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || ||||||| || || | | | || || | |||||||| || || |||||| Sbjct 3251 CGGTCAGCCGACAGATCTAACACCGATTTCTGCTTGATTTCCCACACTGTTTTGTACTTC 3192 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | |||| || || |||||| | | ||||| | ||| |||| | |||| || Sbjct 3191 TCTTTGACATGGTCCGGAATGGTCTTCACCTTTTGCACAGAACCACGGTCGTTCAGTATC 3132 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 | | | ||| || ||||| | | | | | || || | | || | |||| Sbjct 3131 TGGTTACGGACCTCGGGCGTCCAGATATCCAGATCGATCAGCTCTTTCATCAGGTACTTG 3072 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | || ||||||||||| |||||| ||| ||||| | |||||| || Sbjct 3071 TTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGACGTGTACGGC 3012 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| |||| ||||| || ||||| || ||||| ||||| || ||||| ||||||| Sbjct 3011 TCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCACT 2952 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 || | | ||| |||| || | | | | || ||| || ||| ||| || || Sbjct 2951 AGCAAAGAGTTGCGGATGCCGTGCTTAATCACGTTCTCCTTCAAGGCGGTCCAGTCCCAA 2892 Query 109894 CGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCA 109953 ||||| | || |||| |||||| || || | | ||||| || Sbjct 2891 AGACCAGAGGACGGGGTGACACC---CCACATGTCGAACTGGAAGATACCCTTGCTGGCC 2835 Query 109954 GGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT 110013 || || |||| || ||||||||| ||| | | ||| | ||| || | ||| Sbjct 2834 GGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGGATGTCTCC 2775 Query 110014 AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAG 110073 | | |||| ||| || ||||||||||||| |||| |||| || || | Sbjct 2774 ATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAGTTCACGAGCCTGCTCGCTT 2715 Query 110074 TCGAAGGGA-AGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAAT 110132 ||||| | | || || | |||| || |||| || |||||||||||||| | || | Sbjct 2714 TCGAACGCATAGTTCATGA-GAATGAAAGCATCGGCCAGACCCTGAACACCAATGCCCAC 2656 Query 110133 GGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGAT 110192 ||||| || |||||| || |||||| | | || ||||| ||||| ||| || Sbjct 2655 AGGGCGGTGGCGCATGTTGGACTTTCGAGCCTCTGCAACCGGGTAGTAGTTGACGTCAAT 2596 Query 110193 GACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA 110252 ||| || || || || || |||||| | |||| || || | ||| ||||| Sbjct 2595 AACCTTGTTAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCTTCTTGTAGTCGAA 2536 Query 110253 CGTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAG 110311 | |||| ||| ||| | || || | ||| | |||||| | |||||||| | Sbjct 2535 -GACACCGTCCTCC------ACAAACTTAGGTAAAGCCACAGACGCCAAGTTGCACACGG 2483 Query 110312 AAGTCTCGTCTTTGTCGGTGTAT--TCCAAAATTTCCGTACACAAGTT---GGAACTCTT 110366 ||| || | || |||| |||| | || |||||||| ||| | | Sbjct 2482 CCACCTCATCC--GGCGACGTATACTCCATTACCTCACAGCACAAGTTACTGGATCGGAT 2425 Query 110367 AATGACACCCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGT 110425 || ||||| |||| ||| || || || |||| ||| |||||| ||||||| Sbjct 2424 CGTG----CCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGAGCATAA 2369 Query 110426 ATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGA 110485 |||| || || || |||| | | | |||| ||||| | || ||| Sbjct 2368 ATGGCACGCCCGTCTCAATCTGCGCATCTAAAATGCTGAACCATAGCT--GCTGCGCATT 2311 Query 110486 CAGTTGCGTT---AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCT 110542 | ||| || |||| | || |||| |||||||| || | ||| || || | Sbjct 2310 AA-TTGTCTTGCGAGCGCGTCCCTCCTTTTCGTACTTTTCATAAAGCGTCTCGAACTCGT 2252 Query 110543 GTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA 110601 ||| | ||| || | ||| | || | || |||||||| | ||| || ||| Sbjct 2251 CTCCCCAGCAC-TCGTAGAGAGCAGGAGCTTCGTTCGGACAGAATAAACTCCACTTGCCA 2193 Query 110602 CCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGG 110661 | || |||| ||||| ||||| ||||||||||| | || |||| | |||||| Sbjct 2192 TTAGCTTCCACCCGTTTCATAAACAGATCAGGAATCCATAGAGCGTAGAATAAGTCACGC 2133 Query 110662 CAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAG 110721 || | ||||| ||| ||||| || || || | ||| || | | || | Sbjct 2132 GCTCGGTGCAATTCATTACCGTGGTTTTTACGCAGGTCTAGAAACTCAAACACGTCGGCA 2073 Query 110722 TGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACC--CGCCT-GGTTAACA 110778 ||||| || || | || | ||| | |||||| || || || | ||| ||| || Sbjct 2072 TGCCACGGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACG 2013 Query 110779 TAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTT 110838 || || || ||| | || || |||| | ||| ||||| || || | || |||||| Sbjct 2012 TATCGGGCCGTGTCGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTA 1953 Query 110839 GTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCC 110898 || || | ||| | ||| |||| || |||| ||| ||| || ||||| ||||| Sbjct 1952 GTGCCACGAATATAGCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCA 1893 Query 110899 GCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCT 110958 ||||| || ||| ||||| | | | ||| |||||||||| ||||||||||| Sbjct 1892 GCCCATTTGGAAATGCACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCA 1833 Query 110959 GCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAG 111018 ||| | || | || ||| || || |||| || || ||||| ||||| ||||| || Sbjct 1832 TCCTGCATAGCTAGTAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAAC 1773 Query 111019 AGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGC 111077 | || || ||||||||| | || | || | || |||||| | ||| || || | || Sbjct 1772 AACGTTGGCGTCGCATGAGT-AAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGC 1714 Query 111078 GGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGT 111137 | | | || || ||| ||||| | ||||| ||||| | | | ||| || Sbjct 1713 CGCTTGAATATTGTTCTTGTGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCG 1654 Query 111138 TTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAA 111197 || | | ||||||| |||||| || || | ||||| || || |||| || || Sbjct 1653 CTCCACGACTTTTCCATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAA 1594 Query 111198 GTATCCAAAATCGAAATCACGATC 111221 || || | || || || || || Sbjct 1593 ATAGTCATACTCAAAGTCCCGGTC 1570 >seq41 Length=30697 Score = 132 bits (146), Expect = 6e-26 Identities = 335/502 (67%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||||||||||||||| | | ||| | ||||||||||| | ||||| ||| | ||| Sbjct 13129 TCGAAACGACCTGGGCGCAAGATAGCCTTGTCAAGAATATCAGCGCGGTTCGTACCAGCA 13188 Query 11566 ATGACTACAATGCCAGTCTCATTG--TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGA 11623 | || || | || || | | | | |||||| ||||| || || | |||||| | Sbjct 13189 AGCACCACCACACCT-TCGC-TCGAATTGAAACCATCCATCTCAACTAGCAACTGGTTAA 13246 Query 11624 TCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC-----C 11678 ||| | ||| ||||| || ||| | | | | | || ||||| | | | Sbjct 13247 GCGTGTTTTCGCGCTCGTCATTGCCGCCCG-AGAAGTTACCCTT-GCTTCGTGCACGCGC 13304 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 || || || || ||||||||||| ||||||||||| || ||||| |||| | || Sbjct 13305 CACTGCATCGATTTCATCGATGAACACGATACACGGAGCATTTGCACGAGCCTCCTTAAA 13364 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 || ||||| || || || || || |||||||||||||| | ||| | | | || Sbjct 13365 CAGATCACGCACGCGTGACGGACCCACGCCTACGAACATCTCGATGAAATCCGACCCCGA 13424 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 | || ||| || ||| ||| |||||||| |||| || | || |||||||| Sbjct 13425 AATGCTAAAGAATGGCACACTAGCTTCACCAGCTGTGGCCTTCGCCAACAGCGTCTTACC 13484 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTA 11918 ||||||||| | |||| | || || || || || |||||||||||| | | | | Sbjct 13485 CGTACCAGGCGGACCAACAAGCAGCGCCCCCTTAGGAATCTTGGCACCAAGGTCCATGAA 13544 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGAT 11978 |||| | || ||||||||||||| |||| | |||| |||||| ||| | Sbjct 13545 ACGCTTCTGGTTGCGAAGGAAGTCCACAAACTCCATGATCTCCTTCTTGGCCTCGTCCAC 13604 Query 11979 ACCCTCAACATCGGTGAAACGA 12000 ||| | ||||| | |||||| Sbjct 13605 ACCGGCCACATC-CTTAAACGA 13625 >seq3976 Length=80323 Score = 120 bits (132), Expect = 4e-22 Identities = 327/499 (66%), Gaps = 5/499 (1%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 |||||||| ||| || ||||| || ||||| ||| |||||||| || || | |||| Sbjct 36103 CCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGACCAGGCATCAGACCACGTTTC 36162 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||||||||| | || || ||||| ||||| ||||| || || | || || Sbjct 36163 TTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAAATGCCTTCTACCGAAGCAAAC 36222 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGAC----TTGTCGAACCACTTGAGAGCCCAGTT 119689 || |||||||| || || | | | || || ||| |||||||||| ||||| || Sbjct 36223 GCCAATAGACGTTCCGCGTACGAT-GACACACGGGGGTCACACCACTTGAGTGCCCAATT 36281 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGC 119749 ||| || || | || |||| || | || || | || || | || || | Sbjct 36282 GGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACGCAGGAGATGATCTTTCTCTAC 36341 Query 119750 ACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCATT 119809 | ||| |||||||||| ||||||| || || ||| ||| |||| | || | Sbjct 36342 AGCATTCTTAATATATGTATCAATAAGCAGTGAATAGACCTCCGAGTGAATATTCTCGAT 36401 Query 119810 GTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATT 119869 ||| | | ||||| |||||||||| | | ||||||||| | ||| || Sbjct 36402 AGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGTACTTGCACTTCATTGCTAAAGTT 36461 Query 119870 GTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTT 119929 || || ||| ||| ||||| ||||| | || || || || | | | ||| Sbjct 36462 CATGGCGAGATTCTCATTCACAATGCCATCACTGGCTGCAAAAAAGGCAAGCACATGCTT 36521 Query 119930 TATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGTC 119989 || || | ||||||| || | ||||||||||| || | | ||| | |||||| Sbjct 36522 AATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAATCCTTGAGATCATGCACCAAGTC 36581 Query 119990 CACCTCTTCAGCTGTCCAG 120008 | |||||| ||||||||| Sbjct 36582 GAGCTCTTCGGCTGTCCAG 36600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588943702028600