Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1055 132 1e-25 seq4330 89.7 1e-12 >seq1055 Length=24595 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || ||||||||||| || | || || | || ||||| |||||||| || || ||||| Sbjct 13499 TTCTGAATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGATC 13558 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || ||||| ||||| ||||| || ||||| |||||||| || ||| Sbjct 13559 AGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 13618 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| ||| || ||||| || | |||| ||||| ||||||||||| ||||| || Sbjct 13619 ATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTTACAAAG 13678 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 13679 ATCTGCAT 13686 >seq4330 Length=10061 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAAAAGCCCGGAGGTGATGACCTGA 160571 ||||| | ||| | ||||| ||| | || |||| |||| || | || |||| || Sbjct 2068 TGGCATGCCGACGTGTTTGAGTTTCTAGACCTGCGTAAAAACCACG--GTAATGAATTGC 2125 Query 160572 TGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGA 160631 |||| | || | |||||||| | |||| | | ||||| || ||||| | ||| Sbjct 2126 ACCGAGCGCGTGACTTATTCTACGCTCTATGGATTCCTGATCTGTTTATGAAACGGGTGG 2185 Query 160632 AAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTT 160691 ||| ||||| | ||||| | |||||||| || ||||| |||| || | || | Sbjct 2186 AAGCTAATGGCAAGTGGAGTTTATTCTGTCCGAACGAAGCTCCTGCTCTCTACGAGTGCT 2245 Query 160692 ATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGA 160738 || |||||||||||| |||||||||| |||||||| |||||| Sbjct 2246 GGGGAGACGAGTTCGAGACGCTTTATGAAAAGTACGAAAAGGAGGGA 2292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109419237772829