Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3976 190 2e-43 >seq3976 Length=80323 Score = 190 bits (210), Expect = 2e-43 Identities = 406/603 (67%), Gaps = 10/603 (2%) Strand=Plus/Plus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||| | ||| ||||| || || | || || || | ||| || | || || || | Sbjct 36074 ACATGAGACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGA 36133 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCA 19071 | | | |||||||||||| || | ||| || | ||| || ||||| ||| || || ||| Sbjct 36134 AGCTAAGACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCA 36192 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || |||||||| | ||||| || | ||| | ||| | || | || Sbjct 36193 GAGAAGAAAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACA 36252 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | | ||| || |||||||||| || ||||| || |||||||| || || || Sbjct 36253 CGGGGGTCACACCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCA 36312 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAA 19251 |||| | | |||| ||| | | || |||| ||||| ||||||||| Sbjct 36313 ATAGCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATG----TATCAATAAG 36368 Query 19252 CTGTACATT----TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 | || || || || |||||||| || ||||| || ||||| |||||||| || | Sbjct 36369 CAGTGAATAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCG 36428 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 ||||| | || || |||||| | | ||| | | | | ||| ||||| || || || Sbjct 36429 AGCTTCAGGTACTTGCACTTCATTGCTAAAGTTCATGGCGAGATTCTCATTCACAATGCC 36488 Query 19368 ATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA 19427 |||||| ||||||||||| || | ||||| ||||||||||| ||||| || | Sbjct 36489 ATCACTGGCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAG 36548 Query 19428 TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGC 19487 ||| |||||||| || | ||| | || || | ||||| ||||||| || ||||| Sbjct 36549 TGTTTTCCAATCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGC 36608 Query 19488 CTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 ||| ||||| || ||||| | ||| | || | || |||||||| | ||||| | Sbjct 36609 CTCGGCTTTCTTGTACATTTGCCACACGTCGTTCTCCTGAATAGGAAAAAGCACAAAACG 36668 Query 19548 ATT 19550 ||| Sbjct 36669 ATT 36671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562077975358680