Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3976 165 1e-35 >seq3976 Length=80323 Score = 165 bits (182), Expect = 1e-35 Identities = 337/494 (68%), Gaps = 10/494 (2%) Strand=Plus/Plus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| ||||| || || | ||||||||| | ||| || | || || || ||| | | Sbjct 36081 ACAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAG 36140 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAAGA 37293 || ||||| | ||| | ||| || | |||||| || | ||| ||| | ||||| |||| Sbjct 36141 ACCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGA-GCAGAAGGAGCCAGAGAAGA 36199 Query 37294 AAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA---ACTATAAT 37350 |||| ||||| || | ||||| || | |||||| || | | ||| || | Sbjct 36200 AAATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACACGGGGGT 36259 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAAT-TTAACACATTCAATTGTTTCAATT 37409 || | ||| || || ||||| || |||| | || |||||| || || ||||| Sbjct 36260 CACA---CCACTTGAGTGCCCAAT-TGGCTTTCTTCTTGACACATGGGATCGTATCAATA 36315 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || | |||| | ||| ||| || || | ||||| |||||||| || | | Sbjct 36316 GCACGCAGGAGATGATCTTTCTCTACAGCATTCTTAATATATGTATCAATAAGCAGTGAA 36375 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 || | || ||||||||||| || ||||| || |||||||| ||||| || | ||||||| Sbjct 36376 TAGACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCA 36435 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 | || ||| || || || ||| || | || | || ||||| || || |||||||| Sbjct 36436 GGTACTTGCACTTCATTGCTAAAGTTCATGGCGAGATTCTCATTCACAATGCCATCACTG 36495 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTC 37649 |||||||| || ||||| |||| || |||||||| | ||||| | | | | ||||| Sbjct 36496 GCTGCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGTGTTTTC 36555 Query 37650 CAATCATTAATATC 37663 ||||| || | ||| Sbjct 36556 CAATCCTTGAGATC 36569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592284318827480