Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4330 199 7e-46 seq3976 159 6e-34 >seq4330 Length=10061 Score = 199 bits (220), Expect = 7e-46 Identities = 489/724 (68%), Gaps = 32/724 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | ||||| | | | ||| | ||| || ||||| || Sbjct 3072 GTTCACGATCGTGAACTCACCAGCAAGCACACGTCGGTTGTACATGTTCGACGTGTACGG 3013 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||||| ||||||||| || || ||||| ||||| || || ||||| |||||||| Sbjct 3012 CTCGATGGACTCGTTGTTACCAAGGATCTGAGCAGTCGAAGCAGTAGGCATAGGAGCCAC 2953 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CGCCG--AAGCTCTGCCCAGT 213084 || | | ||| | | ||||||| || | | | || ||| | | ||||| Sbjct 2952 TAGCAAAGAGTTGCGGATGCCGTGCTTA---ATCACGTTCTCCTTCAAGG-CGGTCCAGT 2897 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| ||||| || | || ||| ||||||||| ||||| ||||| || | Sbjct 2896 CCCAAAGACCAGA--GGACGGGGTGA--CACC--CCACATGTCGAACTGGAAGATACCCT 2843 Query 213145 TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGG 213204 |||| | ||| |||||| | | ||| ||||| | || ||||| | ||| || Sbjct 2842 TGCTGGCCGGGGAGCCCTGAAATGTCTCGTACGGGCCCAGTTCTTTGGCAATCTCCATGG 2783 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG-GCC 213263 | | || || | ||| || |||||||| ||||| || | | |||| || ||| | ||| Sbjct 2782 ATGTCTCCATCGAAGCATAATAGATGGTCTCAAAAATATTCTTGTTCAG-TTCACGAGCC 2724 Query 213264 T-CTGGGGACGT--GAAGGGCATCAT-CATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 | || | | | ||| | ||| | |||| | ||| |||| ||||| ||||| || Sbjct 2723 TGCTCG---CTTTCGAACG-CATAGTTCATGAGAATGAAAGCATCGGCCAGACCCTGAAC 2668 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAA 213378 || ||||| | || | ||| | || ||| ||||| |||| ||| | | ||||| Sbjct 2667 ACCAATGCCCACAGGGCGGTGGCGCATGTTGGACTTTCGAGC-CTCTGCAACCGGGTAGT 2609 Query 213379 AGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGT 213438 ||||| ||| || | |||||| ||||| |||||| |||| || || |||| ||| | Sbjct 2608 AGTTGACGTCAATAACCTTGTTAAGGTTACGGGTGACCACCTTCGTCACATCATACAGCT 2549 Query 213439 ACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCA 213498 || || | ||| || ||||||| |||||||| ||| | || | |||| Sbjct 2548 TCTTGTAGTCGAAGACA------CCGTCCTCCACAAACTTAGGTAAAGCCACAGACGCCA 2495 Query 213499 GGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 |||||| ||||||||||| | | || |||||||| | ||| ||||| ||| | Sbjct 2494 AGTTGCACACGGCCACCTCATCCGGCGACGTATACTCCATTACCTCACAGCACAAGTTAC 2435 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGA 213618 || ||||||| ||||| || ||||| ||||| ||||| |||||| | ||||| ||| Sbjct 2434 TGGATCGGATCGTGCCAAGATTCTGCTGGTTGGACTTACGGTTGGCTGCGTCCTTAAAGA 2375 Query 213619 GCAT 213622 |||| Sbjct 2374 GCAT 2371 >seq3976 Length=80323 Score = 159 bits (176), Expect = 6e-34 Identities = 367/548 (67%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || ||||||||| |||||| ||||| || || || || ||| |||| ||||||| ||| Sbjct 36082 CAAGCAAAGTCCGTGTGCATACCTTCATCACGACTAATTAGCTCGTTCGAGAAGCTAAGA 36141 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||| | || | | |||||||| || || | ||| |||||||||||||| Sbjct 36142 CCAGGCATCAGACCACGTTTCTTGAGCCAAAAGATAGAGCAGAAGGAGCCAGAGAAGAAA 36201 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGA 48309 ||||| || || | || ||||| || | || || | || | | | | | | Sbjct 36202 ATGCCTTCTACCGAAGCAAACGCCAATAGACGTTCCGCGTACGATGACACACGGGGGTCA 36261 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 | ||| || ||||| | || |||||||||| ||||| ||||| || || || || Sbjct 36262 CA-CCACTTGAGTGCCCAATTGGCTTTCTTCTTGACACATGGGATCGTATCAATAGCACG 36320 Query 48370 GAAGAGCT--TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 | ||| | |||| | || | || | | || ||| ||| | ||| || || Sbjct 36321 CAGGAGATGATCTTTCTCTA--CAGCATTCTTAATATATGTATCAATAAGCAGTGAATAG 36378 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 | ||| ||||| | |||||| ||||| || || || ||||| ||| | || ||| Sbjct 36379 ACCTCCGAGTGAATATTCTCGATAGCAATTTGAAAACCGTAAAAGCAGCGAGCTTCAGGT 36438 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 || |||||||| || || || ||||||||||| || || ||||| || Sbjct 36439 ACTTGCACTTCATTGCTAAAGTTCATGGCGAGATTCTCATTCACAATGCCATCACTGGCT 36498 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 ||||| |||||||| ||||| |||| ||||| || || |||| || || | ||||| Sbjct 36499 GCAAAAAAGGCAAGCACATGCTTAATAAAATGACGTTCATTGTCCGTAAGTGTTTTCCAA 36558 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 ||| | || | ||| ||| | ||||| | |||||||| || || ||||| Sbjct 36559 TCCTTGAGATCATGCACCAAGTCGAGCTCTTCGGCTGTCCAGAACGAAGCCTCGGCTTTC 36618 Query 48668 TTGTACAT 48675 |||||||| Sbjct 36619 TTGTACAT 36626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931481717070080