Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4330 141 5e-29 >seq4330 Length=10061 Score = 141 bits (156), Expect = 5e-29 Identities = 322/477 (68%), Gaps = 12/477 (3%) Strand=Plus/Minus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 || |||||||||||| ||| | |||| || || | |||||| | ||| ||| Sbjct 2219 TTCGGACAGAATAAACTCCACTTGCCATTAGCTTCCACCCGTTTCATAAACAGATCAGGA 2160 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||| | || || ||||| || | ||||| ||| || ||||| || || Sbjct 2159 ATCCATAGAGCGTAGAATAAGTCACGCGCTCGGTGCAATTCATTACCGTGGTTTTTACGC 2100 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 || |||| || ||||| | || | ||||| || || || || |||||||| ||| Sbjct 2099 AGGTCTAGAAACTCAAACACGTCGGCATGCCACGGCTCCAAGTATATAGCAAAGGATCCT 2040 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 || | ||| ||||||||||| || ||||||| || || || || || || ||||| Sbjct 2039 TTGCGTTTGCCTCCACCTTGGTCCACGTATCGGGCCGTGTCGTTAAACACCCGTAACATG 1980 Query 26129 GGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT--CTA 26185 |||| | |||| ||| || | || || |||| | |||| | | |||| | || Sbjct 1979 GGAA-TGATCCCGTTAGAGGAACCATTAGTGCCACGAATATAG----CTGTTAGTGGCTC 1925 Query 26186 ATATCGTGAGCAT--GAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT-CT 26242 ||| || |||| ||| || || |||||||||||||| ||||| ||||| | || Sbjct 1924 GTATGTTGTGCATACTAATGCCAATCCCACCAGCCCATTTGGAAATGCACGCACATTGCT 1865 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAA 26302 || ||| || |||| |||| || |||| | | ||| ||| ||||||||| || Sbjct 1864 TCAA-TGTGTCATAAATACCTTCAATCGAATCATCCTGCATAGCTAGTAAAAAACACGAG 1806 Query 26303 GATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAA 26359 || | ||| | ||| ||||| | |||||| || || || || ||||||||| || Sbjct 1805 GACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTTGGCGTCGCATGAGTAAAA 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253026470821025