Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4330 129 7e-25 seq16 100 3e-16 >seq4330 Length=10061 Score = 129 bits (142), Expect = 7e-25 Identities = 467/722 (65%), Gaps = 9/722 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||| | || || || || ||||||| |||||||| | ||||| || Sbjct 1573 CGGGACTTTGAGTATGACTATTTCGGATTCAAAACACTTGAGAAAGGATATCTCTTTCGT 1632 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | |||| | || |||| || || | | | ||||| || || | || ||| Sbjct 1633 GTTAATGGAAAAGTCGTGGAGCGACCGCAACAATTAATTATGCGCGTTGCTTTAGGTATC 1692 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTT 75306 ||| | | | ||| | | | |||||||| ||||| |||||| || | || | || Sbjct 1693 CACAAGAACAATATTCAAGCGGCTTTGGAGACGTACGAGTTGATGTCTCAGAAGTTTTTT 1752 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTG 75366 | ||| || || ||||| | || |||||||| || || | || || ||||| || Sbjct 1753 -ACTCATGCGACGCCAACGTTGTTTAATGCTGGAACTCCTCGCCCCCAACTGTCCTCGTG 1811 Query 75367 CTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTG 75426 || | | || | |||| || || || | ||||| |||| || | | | | || Sbjct 1812 TTTTTTACTAGCTATGCAGGATGATTCGATTGAAGGTATTTATGACACATTGAAGCAATG 1871 Query 75427 TGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAA 75486 |||| || || || |||||||| || ||||| || || || | | |||||| Sbjct 1872 TGCGTGCATTTCCAAATGGGCTGGTGGGATTGGCATTAGTATGCACAACATACGAGCCAC 1931 Query 75487 TAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 ||| | || |||||| || || |||||| || | || || ||||| ||| | || | Sbjct 1932 TAACAGCTA-TATTCGTGGCACTAATGGTTCCTCTAACGGGATCATTCCCATGTTACGGG 1990 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCG 75602 | ||||||| ||| || || || || | |||| || | ||||| || ||| | | Sbjct 1991 TGTTTAACGACACGGCCCGATACGTGGACCAAGGTGGAGGCAAACGCAAAGGATCCTTTG 2050 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACC 75662 | | |||||||| || ||||||||||| | | ||||| || || | || |||| Sbjct 2051 CTATATACTTGGAGCCGTGGCATGCCGACGTGTTTGAGTTTCTAGACCTGCGTAAAAACC 2110 Query 75663 AAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 | ||| | ||| | || | || | || | | || |||||||| || || | Sbjct 2111 ACGGTAATGAATTGCACCGAGCGCGTGACTTATTCTACGCTCTATGGATTCCTGATCTGT 2170 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAG 75782 | ||||| ||||| || | ||| | ||| | | |||||||| || | || || | Sbjct 2171 TTATGAAACGGGTGGAAGCTAATGGCAAGTGGAGTTTATTCTGTCCGAACGAAGCTCCTG 2230 Query 75783 GTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAG 75841 ||||| ||| || | ||| || ||||| || | || || |||||| ||| ||||| Sbjct 2231 CTCTCTACGAGTGCTG-GGGAGACGAGTTCGAGACGCTTTATGAAAAGTACGAAAAGGAG 2289 Query 75842 GG 75843 || Sbjct 2290 GG 2291 >seq16 Length=23387 Score = 100 bits (110), Expect = 3e-16 Identities = 239/355 (67%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 14432 AAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTA 14491 ||||| ||||||||||| | || || | || | ||||||||||| || || ||| | Sbjct 10841 AAGGTCGCACAACTGGCTGGCTACGTGTCAGAACACTCTGCGTACCATCACGGCGAACAA 10782 Query 14492 TCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATTAAC 14551 || || | || || || ||||| | || | | || ||||||||| || Sbjct 10781 AGTTTGCAGGGCTGTATCGTGAATATGGCACAGGATTTCGTCGGAAGCAACAACATTCAC 10722 Query 14552 CTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG 14611 ||||| || ||||| |||||||||||| | |||||||| |||||||| | ||| Sbjct 10721 CTTCTGTCGCCCATCGGTCAGTTTGGTACGCGTTTAATGGGTGGCAAGGATGCGGC-CAG 10663 Query 14612 -ACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGC-AAGA-TCTTTGATCCTCGG 14668 | | || ||||||||||| || || | | ||| ||| ||| ||||||| | Sbjct 10662 CTCTCGTTATATTTTCACAAA--TTTGGAACAACTCACGCGTAGACTCTATGATCCTTTG 10605 Query 14669 GATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTTTAC 14728 ||| | | || || || |||||||| || || | || || ||||| || | ||| Sbjct 10604 GATAATGATGTGCTGAAGTATTTGGACGAAGACGGCCAGTCAATCGAACCGGAGTGGTAC 10545 Query 14729 ATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || || | | || ||||| ||||| || || | || ||||| || ||||||| Sbjct 10544 ATTCCGGTTATCCCCATGGTACTCGTTAACGGCAGTGACGGTATTGGAACGGGTT 10490 Score = 96.9 bits (106), Expect = 4e-15 Identities = 243/358 (68%), Gaps = 30/358 (8%) Strand=Plus/Minus Query 13548 TTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAG- 13606 |||| ||||||||||| ||||||| || || | || ||||| || || | |||| Sbjct 11858 TTACTGGTATTCCCAAACTGGATGATGCCAATCACGCTGGTACAGCGAAA--AGCAAAGA 11801 Query 13607 -TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTC 13665 || ||||| ||| | ||||| || ||||| || ||||| | || |||| || || | Sbjct 11800 TTGCACTCTGATTCTAACAGAAGGCGATTCCGCCAAAACTGTTGCTGTTGGTGGCCTTGC 11741 Query 13666 TGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA-ATGTAAGAATGTTC 13724 ||||||||| | ||| |||| ||||| |||||| | || ||||| ||| | || |||| Sbjct 11740 TGTCGTTGGCAGAGATTACTATGGTGTTTTCCCATTGCGAGGTAAGATGCTA-AACGTTC 11682 Query 13725 GGGACGCTTCGGTGGCACAGCTCACAT-----CAAACCAGGAG-TTC--AACGATCTCAA 13776 | || || | |||| |||| || || ||||| ||| |||| || Sbjct 11681 GTGAAGC----AAGTCACA-CTCAAATTTTGAAGAATGAGGAGATTCAAAACGTGGTC-- 11629 Query 13777 GAAGATCCTTGGTCTTCAACAAGGAAAAGACTACCAAGATGTTTCTGAA---CTT-CGCT 13832 |||||||||||||| | | || || ||||| | || | ||| ||| | | Sbjct 11628 -AAGATCCTTGGTCTCAAGTACGGCGAAAACTACGA----GTCTACGAAGGGCTTGAGGT 11574 Query 13833 ATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCT 13890 |||||| | ||||| ||| ||||| ||| | || || ||||||||||||||| Sbjct 11573 ATGGTCACTTGATGATCATGGCAGATCAAGATCACGACGGCAGTCACATCAAGGGTCT 11516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596536885614560