Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq308 138 3e-27 seq4330 127 6e-24 seq925 111 5e-19 seq167 109 2e-18 seq16 84.2 6e-11 >seq308 Length=13039 Score = 138 bits (152), Expect = 3e-27 Identities = 202/279 (72%), Gaps = 14/279 (5%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||||||||||||||| || || |||||||| |||||||| | ||| ||||| Sbjct 10099 CGCCGCTGAATATAACCAGTCTCAGCAGTCTTTACAGCGGTATCAATCAAACCTTCACGA 10158 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| ||||| || | ||||| || ||| | ||| ||| | | || | | Sbjct 10159 CCACCCATAGCGTGGAAAAAGAACTCTTGTGG-CGTTAAACCCTTCAA-ATACGAATTTT 10216 Query 302711 CAACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | |||||||| || |||||| |||| || |||| |||| ||||| || | Sbjct 10217 CCACGAAACCTCGGCTCTCGGGACCTAAATCATC---CTTGCCGTAGTGCGGCAGCGTTC 10273 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 | | | || ||||| ||||||||||| ||||| |||||||| |||| |||| || Sbjct 10274 GATGGTTGAAACCATATGGAATACGCTTTCCTTCAACATTCTGCTGGCCCACACACGCAA 10333 Query 302828 TCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864 | ||||| ||||| || ||||| | |||||||| || Sbjct 10334 TGATCTGTGAAATGTTAATAAATGA--ACCCTTGGAACC 10370 >seq4330 Length=10061 Score = 127 bits (140), Expect = 6e-24 Identities = 328/499 (66%), Gaps = 3/499 (1%) Strand=Plus/Minus Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGA 156083 ||||||| || |||||||| || || | ||||| ||| || || || || || Sbjct 2066 GGCTCCAAGTATATAGCAAAGGATCCTTTGCGTTTGCCTCCACCTTGGTCCACGTATCGG 2007 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 || || | || || || | || ||| ||||| || || || || | ||||| || || Sbjct 2006 GCCGTGTCGTTAAACACCCGTAACATGGGAATGATCCCGTTAGAGGAACCATTAGTGCCA 1947 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 ||||||| || | || | || || ||| | ||||| ||||| | |||| Sbjct 1946 CGAATATAGCTGTTAGTGGCTCGTATGTTGTGCATACTAATGCCAATCCCACCAGCCCAT 1887 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || ||||| || |||| ||| | || | ||||||||||||| |||||||| | | Sbjct 1886 TTGGAAATGCACGCACATTGCTTCAATGTGTCATAAATACCTTCAATCGAATCATCCTGC 1827 Query 156264 ATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 || | ||||| | | ||||| | ||| || || || |||||||| || || | || Sbjct 1826 ATAGCTAGTAAAAAACACGAGGACAGTTGGGGGCGAGGAGTTCCAGCATTAAACAACGTT 1767 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCA 156383 || || |||||| ||||| |||| | |||||| | ||||| |||||| | | | | Sbjct 1766 GGCGTCGCATGAGTAAAAAACTTCTGAGACATCAACTCGTACGTCTCCAAAGCCGCTTGA 1707 Query 156384 AGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 | ||| | ||| |||| | || || | ||| | || || || ||||| || Sbjct 1706 ATATTGTTCTTGTGGATACCTAAAGCAACGCGCATAATTAATTGTTGCGGTCGCTCCACG 1647 Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA 156503 | ||||| || || | || ||| | || || ||||| || |||||||| ||| Sbjct 1646 ACTTTTCCATTAACACGAAAGAGATATCCTTTCTCAAGTGTTTTGAATCCGAAATAGTCA 1587 Query 156504 AACAGAAAATCACGGTTGT 156522 || ||| || |||| || Sbjct 1586 TACTCAAAGTCCCGGTCGT 1568 >seq925 Length=32479 Score = 111 bits (122), Expect = 5e-19 Identities = 133/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 353957 AGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGAT-AGCTC-TTAATTGCTGT 354014 ||||||| || |||| || |||| |||||| || | | | ||| ||||| || | Sbjct 12756 AGAATTCGTTGTGGTGAGTAATCATAACCACACCACC--GTTGAACTCCTTAATGGCCGA 12699 Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 || ||||||||||||||||||||||| ||| | || || || || ||||| | ||| | Sbjct 12698 AGCAAGAGCACCAAGCGAGTCACGGTCAAGGTAGTTCGTGGGCTCATCAAGCACAAGGAT 12639 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGA 354131 |||||| | || |||||| ||||| ||||| || || || |||||||| || || || Sbjct 12638 GTGCGGGTTCAGCCACATAGCTGCGGCCAGCACAACTTTCACCTTCTGACCACCGGA 12582 >seq167 Length=15714 Score = 109 bits (120), Expect = 2e-18 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || | ||| ||| || ||||| || || | ||| || || || || |||| Sbjct 7481 GGCAATGATACCGCACACATCGCACACGTGCACACGGTACGCGTCCGAGTTAGCAAATAG 7422 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || || ||| || || ||||| || |||| ||||||||| ||||||||||| Sbjct 7421 GCGGTCCATGAGAAAGTTAGCTGACCCGTGAGAGATCAGACAATCACGTTCCATTTCACC 7362 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| |||||||| | ||| || ||||| || || || || || Sbjct 7361 CATACGCAGACCACCTTCGCGAGCACGACCTTCCATGGGCTGGCGTGTCAGCATAGTCAC 7302 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| ||||| || ||| || | ||||||||||| || ||||||||||| Sbjct 7301 GGGACCACGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAA 7242 Query 251643 TGCGGGACCGATGAAGAT 251660 | ||| || || ||||| Sbjct 7241 CGTGGGTCCAATAAAGAT 7224 >seq16 Length=23387 Score = 84.2 bits (92), Expect = 6e-11 Identities = 141/203 (69%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 60137 AATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCA 60196 |||| |||||||||||| | | || || |||||||||||||| | ||| || ||| Sbjct 10640 AATT-TGTGAAAATATAACGAGAGCTGGCCGCATCCTTGCCACCCATTAAACGCGTACCA 10698 Query 60197 AATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGA 60256 || || ||| | ||| | || | ||||||||| || ||||||| || || | | Sbjct 10699 AACTGACCGATGGGCGACAGAAGGTGAATGTTGTTGCTTCCGACGAAATCCTGTGCCATA 10758 Query 60257 CCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACA 60316 || ||| || | ||||| ||| |||||||| || |||| |||||||| || Sbjct 10759 TTCACGATACAGCCCTGCAAACTTTGTTCGCCGTGATGGTACGCAGAGTGTTCTGACACG 10818 Query 60317 TATCCACTGAATTGTGCGACTTT 60339 || ||| | ||||||||| || Sbjct 10819 TAGCCAGCCAGTTGTGCGACCTT 10841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471734871432419