Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3976 143 4e-28 seq159 109 9e-18 >seq3976 Length=80323 Score = 143 bits (158), Expect = 4e-28 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||||| |||||||||||| || ||||||||||||||||||||| | ||| Sbjct 35782 ACACCAGCCTTGGAATACTCGCCCACACGTTTCTCGAAAAAGTTGGTCTTGCCTTGTAGC 35841 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG-CACCCGAG 794011 ||||||| |||||||| ||| || || | | || ||| | ||||| || Sbjct 35842 GAGATCATATCCATCCAGTCGAATGGATTCTTGGCATGATAAATCTTGGCAACACCC-AG 35900 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 || ||||| ||||| || ||||| ||||||||||| |||||||| || | |||||| Sbjct 35901 TGAGTATAGCAGACGGTCAGCCACGAACTCAATGTACTGACACATGAGTGCCGAGTTCAT 35960 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGAT 794119 ||| |||||| | || || ||||| || | |||||||| | ||| || Sbjct 35961 GCCAATGAGCTCGACAGGAAGCGAGTCACGCACAAACTCGTGCTCAAT 36008 >seq159 Length=42990 Score = 109 bits (120), Expect = 9e-18 Identities = 186/266 (70%), Gaps = 14/266 (5%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || ||||| ||||| ||| | ||||| || || | | Sbjct 40749 TGAACTTGGTCACAGCCTTTGTGCCTTCTGACACGGCATGCTTTGCCAGCTCACCCGGTA 40690 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT-GCCGA--TCGTGTTGCGCTTGTTAG 1485586 || || ||||| || |||||||||||||| | | | | ||| || |||||| Sbjct 40689 GCATGAGACGCACAGCCGTCTGGATCTCGCGACTCGACAACGTCGACTT---CTTGTTGT 40633 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||| || |||||| || | ||||||| |||| |||||||||| || |||| Sbjct 40632 AACGCGACAACTTGCCGGCTTCCGACGCGATGCGCTCGAAAATGTCGTTGATGAATGAGT 40573 Query 1485647 TCATGATCGACAT----CGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGC 1485702 |||| |||||||| || || | ||||||| ||||||||||| || ||| Sbjct 40572 TCATAATCGACATACCGCGCTTACT----GATGCCCGTCTCGGGGTGCACTTGACGCAGC 40517 Query 1485703 ACCTTGTAAACAAAGGACGAGTACGA 1485728 || ||||| | | | ||||||||| Sbjct 40516 ACTTTGTAGATGTAAGTCGAGTACGA 40491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915779734800893