Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peronospora_20effusa_20[genbank_20GCA_5F002245725.1_202017-08-10] 4,387 sequences; 23,992,579 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1055 111 1e-19 >seq1055 Length=24595 Score = 111 bits (122), Expect = 1e-19 Identities = 144/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||||||||| || |||||||| || | || | || ||||| ||||| || || |||| Sbjct 13497 CCTTCTGAATATTGTAGTCCGACAGCGTACGACCGTCTTCCAGCTGCTTGCCAGCAAAGA 13556 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | || |||||||| | ||||| || ||||| || Sbjct 13557 TCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 13613 Query 34908 CTATCGATTCATTGGC----CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | | ||| || || | || |||||||| || || | |||||| Sbjct 13614 -TGTCAATGCAGTCGGACGGCTCCACGTCCAAAGTAATGGTCTTGCCTGTCAAAGTCTTT 13672 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 13673 ACAAAGATCTGCATGAT 13689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325675386325553